PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Medtr7g109870.4
Common NameMTR_7g109870
Organism
Medicago truncatula
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Trifolieae; Medicago
Family MYB_related
Protein Properties Length: 438aa    MW: 49519.4 Da    PI: 9.7449
Description MYB_related family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Medtr7g109870.4genomeMtView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding22.72.2e-07135177447
                      S-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHH CS
  Myb_DNA-binding   4 WTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqky 47 
                      WT+eE   l d+++++  + +  Ia +++  Rt +++k+r++++
  Medtr7g109870.4 135 WTKEETNELFDLCERFDLR-FVVIADRFPSSRTVEELKDRYYSV 177
                      *******************.*********************987 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF162824.4E-30107181IPR032563DAMP1, SANT/Myb-like domain
SuperFamilySSF466897.01E-7131182IPR009057Homeodomain-like
SMARTSM007171.3E-8131180IPR001005SANT/Myb domain
Gene3DG3DSA:1.10.10.601.9E-6134179IPR009057Homeodomain-like
CDDcd116583.28E-18135177No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0032259Biological Processmethylation
GO:0000812Cellular ComponentSwr1 complex
GO:0035267Cellular ComponentNuA4 histone acetyltransferase complex
GO:0003677Molecular FunctionDNA binding
GO:0008168Molecular Functionmethyltransferase activity
Sequence ? help Back to Top
Protein Sequence    Length: 438 aa     Download sequence    Send to blast
MDAKDILGLH KNSFPSSLDN KKSRPPKESQ RKPDGISREV YALTGGMPPL MPSIDASQLK  60
KKPPTHEKVT WQWLPFTNSA RKDDLHLYHW VSHNVRVVNG VLPTGDYSFA KYNKSVDIIK  120
YTDEEYEKYL TDPMWTKEET NELFDLCERF DLRFVVIADR FPSSRTVEEL KDRYYSVLRA  180
ILLARAASSG DIATHPIIKE PYNVSQEMER KRALSMVLSQ TRQQEKRDEE VLIEAKRIAE  240
LRMASKVTEQ SQLAVASNAD AELTERAVPG ETVSPSNVQL PQMVVPSADN ASTLASLRML  300
RVYLRTYALE QMVQASNATA GVRTIKRVEQ TLQDLGVNLK PRVPTKAVCA EHLELRREIL  360
TWLNLQKQVQ YKEAEGSSFR DGSYGETPGT PKDRTFIPDS LNFGGERVGK KDQKRKGHGA  420
PPTAAHKRPR KQKASDL*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
3hm5_A7e-21106191493DNA methyltransferase 1-associated protein 1
4iej_A7e-21106191493DNA methyltransferase 1-associated protein 1
Search in ModeBase
Expression -- UniGene ? help Back to Top
UniGene ID E-value Expressed in
Mtr.121440.0glandular trichome| leaf| pod| root| stem
Functional Description ? help Back to Top
Source Description
UniProtComponent of the SWR1 complex which mediates the ATP-dependent exchange of histone H2A for the H2A variant HZT1 leading to transcriptional regulation of selected genes by chromatin remodeling. Component of the NuA4 histone acetyltransferase complex which is involved in transcriptional activation of selected genes principally by acetylation of nucleosomal histone H4 and H2A. {ECO:0000305|Ref.5}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapMedtr7g109870.4
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_003626001.10.0SWR1-complex protein 4
RefseqXP_024627193.10.0SWR1-complex protein 4
SwissprotQ8VZL60.0SWC4_ARATH; SWR1-complex protein 4
TrEMBLA0A072U4160.0A0A072U416_MEDTR; DNA methyltransferase 1-associated protein
STRINGAES822190.0(Medicago truncatula)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G47210.10.0MYB_related family protein
Publications ? help Back to Top
  1. Young ND, et al.
    The Medicago genome provides insight into the evolution of rhizobial symbioses.
    Nature, 2011. 480(7378): p. 520-4
    [PMID:22089132]
  2. Gómez-Zambrano Á, et al.
    Arabidopsis SWC4 Binds DNA and Recruits the SWR1 Complex to Modulate Histone H2A.Z Deposition at Key Regulatory Genes.
    Mol Plant, 2018. 11(6): p. 815-832
    [PMID:29604400]