PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Medtr7g110810.1
Common NameMTR_7g110810
Organism
Medicago truncatula
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Trifolieae; Medicago
Family bHLH
Protein Properties Length: 374aa    MW: 41955.6 Da    PI: 9.9382
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Medtr7g110810.1genomeMtView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH49.67.3e-16212257454
                      HHHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHH CS
              HLH   4 ahnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksL 54 
                       hn  Er+RRd+iN+++  L+el+P++      K++Ka++L  A++Y+k L
  Medtr7g110810.1 212 VHNLSERKRRDKINEKIRALKELIPNC-----NKMDKASMLDDAIDYLKTL 257
                      6*************************8.....6****************98 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5088818.228208257IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SuperFamilySSF474594.58E-20209271IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene3DG3DSA:4.10.280.107.6E-20212266IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PfamPF000101.6E-13212257IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
CDDcd000833.12E-16213262No hitNo description
SMARTSM003539.7E-18214263IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 374 aa     Download sequence    Send to blast
MFDSSNSEMT KSNGLGSSHM FTYLTPLKKP RVDSNQTATT NSQKQYLMGC EYQKNGKVNF  60
SNFSIPAVFL KSNQQRVQEK ESKAVACTKF QQQKHLTLNA ATKSNSGYER SRELLPTVDE  120
HSEAAASHTN APRIRGKRKA SAINLCNAQK PSSVCSLEAS NDLNFGVRKS HEDTDDSPYL  180
SDNDEETQEN IVKEKPVREG NRVKRSYRNA KVHNLSERKR RDKINEKIRA LKELIPNCNK  240
MDKASMLDDA IDYLKTLKLQ LQIMSMGRAL CMPLNHFMML PAHHMNMNMN MNAQHLMMGF  300
RPHVQFPIPQ MGDGVTNNNN DRVQMFGFSN QLPPQMSIPN APFIPPIIGN SSSTTPPTPT  360
TFGNQNQPGR TCG*
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1216221ERKRRD
2217222RKRRDK
Cis-element ? help Back to Top
SourceLink
PlantRegMapMedtr7g110810.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankBT1469270.0BT146927.1 Medicago truncatula clone JCVI-FLMt-16C17 unknown mRNA.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_003626080.10.0transcription factor PIF3
TrEMBLG7KUN60.0G7KUN6_MEDTR; Helix loop helix DNA-binding domain protein
STRINGAES822980.0(Medicago truncatula)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF133291829
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G09530.24e-30phytochrome interacting factor 3
Publications ? help Back to Top
  1. Young ND, et al.
    The Medicago genome provides insight into the evolution of rhizobial symbioses.
    Nature, 2011. 480(7378): p. 520-4
    [PMID:22089132]