PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Medtr7g111520.1
Common NameMTR_7g111520
Organism
Medicago truncatula
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Trifolieae; Medicago
Family C2H2
Protein Properties Length: 439aa    MW: 50498.5 Da    PI: 8.1919
Description C2H2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Medtr7g111520.1genomeMtView CDS
Signature Domain? help Back to Top
Signature Domain
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM004431.6E-19196241IPR000467G-patch domain
PROSITE profilePS5017417.024198243IPR000467G-patch domain
PfamPF015853.0E-16199239IPR000467G-patch domain
PfamPF121718.1E-5293320IPR022755Zinc finger, double-stranded RNA binding
PROSITE patternPS000280295317IPR007087Zinc finger, C2H2
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003676Molecular Functionnucleic acid binding
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 439 aa     Download sequence    Send to blast
MSEVAQIEGR VRYSAFKKTV KVMITPTDSL DNLKAQLNTY FEHLGENQYT RHLFGQMSCI  60
DLGEDRDEYA WKTASYMPLL IRDDGDVGFM FRNMVEDNIL YMYVRSICNC IEFAVNSTQT  120
NWKSSSAGRL IRSKMDYRWT KGSSSSSKHD SSGSRRNQFK KDQAYDDDDF RLPRNQRPTE  180
NVDLDNVEQA SLDTHITSSN IGFKLLQKMG WKGKGLGKNE QGIVEPIKSG IRDPRLGVGK  240
QEEDDFFTAE ENVQRKKLDI ELEETEENVR KREVLAEREQ KIQTEVKEIR KVFFCELCNK  300
QYKLAMEFEA HLSSYDHNHR KRFKEMKEMH GSSSRDDRQK REQQRQEREL AKFAQIADAQ  360
KQQRLQLQQE SGSAAVSVSS ESKTATALTD QEQRNTLKFG FSAKGTASKS TFGVKKQNVP  420
KKQNLPVASI FGNDSDEE*
Expression -- UniGene ? help Back to Top
UniGene ID E-value Expressed in
Mtr.140470.0flower| root| seed
Cis-element ? help Back to Top
SourceLink
PlantRegMapMedtr7g111520.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankBT0963740.0BT096374.1 Soybean clone JCVI-FLGm-15D7 unknown mRNA.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_024627134.10.0G patch domain-containing protein 8 isoform X1
TrEMBLG7KWE60.0G7KWE6_MEDTR; D111/G-patch domain protein
STRINGAES823590.0(Medicago truncatula)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF59772428
Publications ? help Back to Top
  1. Young ND, et al.
    The Medicago genome provides insight into the evolution of rhizobial symbioses.
    Nature, 2011. 480(7378): p. 520-4
    [PMID:22089132]