PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Medtr7g113010.1
Common NameMTR_7g113010
Organism
Medicago truncatula
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Trifolieae; Medicago
Family FAR1
Protein Properties Length: 588aa    MW: 66110.3 Da    PI: 7.7929
Description FAR1 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Medtr7g113010.1genomeMtView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1FAR141.54.3e-134775462190
             FAR1  21 kskrngeitkrtfvCskegkreeekkktekerrtraetrtgCkaklkvkkek.dgkwevtkleleHnHela 90 
                      +++     t+r+f+C keg++  +k++ + + ++raetrtgC+ ++ +++++  gk++  ++e +HnH l 
  Medtr7g113010.1 477 SKRIGFVLTSRRFTCFKEGTQVVDKRR-QPTAESRAETRTGCTTRMIISLDRkIGKYKFVDFEAQHNHLLL 546
                      4455567899*************9999.99********************9989**************986 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:3.40.50.18201.1E-752274IPR029058Alpha/Beta hydrolase fold
SuperFamilySSF534741.93E-602270IPR029058Alpha/Beta hydrolase fold
PfamPF005615.6E-2126133IPR000073Alpha/beta hydrolase fold-1
PRINTSPR004126.8E-323250IPR000639Epoxide hydrolase-like
PRINTSPR004126.8E-325267IPR000639Epoxide hydrolase-like
PRINTSPR004126.8E-3298111IPR000639Epoxide hydrolase-like
PRINTSPR004126.8E-32112125IPR000639Epoxide hydrolase-like
PRINTSPR004126.8E-32253269IPR000639Epoxide hydrolase-like
PfamPF031012.7E-9479547IPR004330FAR1 DNA binding domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0016021Cellular Componentintegral component of membrane
GO:0016787Molecular Functionhydrolase activity
Sequence ? help Back to Top
Protein Sequence    Length: 588 aa     Download sequence    Send to blast
MEGVEHRTVE VNGIKMHVAE KGKEGPIVLF LHGFPEIWYS WRHQIVALSS LGYRTVAPDL  60
CGYGDTDAPT SVSSYTILHL VGDIVALIDS LGVDQVFLVA HDWGAIIGWY LCLFRPEKVK  120
AYVCLSVPLL PRNPKVKPVD GMQALFGDDY YICRFQEPGK AEAEFGKGSP ELVIKAMLTG  180
RNSGPLILPK EGLLSHPDVS NTKPLPSWLS QEDVAYYASK FEKTGFSGGL NFYRNLNLNW  240
ELTAAWTGAK VKVPVKFITG DLDIVYVSFG AKQYIESGGF KMCQIWRKWL YRVQYVNVTL  300
SFELPSESLR LPSHQHQQPP IVSPFISISV FIHLSITGSS SRLHVSSPLL VTVVSSPSFQ  360
IRKSPSFQTV GTMQLLHFCI AAILLFFCTF AFALLLFLLF LLFSLLITIS DTKAIYVRTF  420
SENMDSSSIP DSVDKWVNNI HEKNVHHEKE GIANSGPHLG MKFESETAAY EFDNDYSKRI  480
GFVLTSRRFT CFKEGTQVVD KRRQPTAESR AETRTGCTTR MIISLDRKIG KYKFVDFEAQ  540
HNHLLLPPEY VHMIRSHRHI FEAQASQIEH ECLGACTVIF YVASLKD*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5xmd_A1e-161128135315Epoxide hydrolase A
5xmd_B1e-161128135315Epoxide hydrolase A
5xmd_C1e-161128135315Epoxide hydrolase A
5xmd_D1e-161128135315Epoxide hydrolase A
Search in ModeBase
Cis-element ? help Back to Top
SourceLink
PlantRegMapMedtr7g113010.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAC1543910.0AC154391.1 Medicago truncatula chromosome 7 clone mth2-143d17, complete sequence.
GenBankAC1674030.0AC167403.2 Medicago truncatula chromosome 7 BAC clone mte1-14f12, complete sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
TrEMBLG7KXM10.0G7KXM1_MEDTR; Epoxide hydrolase
STRINGAES824600.0(Medicago truncatula)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF15115212
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G38180.15e-16FAR1-related sequence 5
Publications ? help Back to Top
  1. Young ND, et al.
    The Medicago genome provides insight into the evolution of rhizobial symbioses.
    Nature, 2011. 480(7378): p. 520-4
    [PMID:22089132]