PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Medtr7g115120.1
Common NameMTR_7g115120
Organism
Medicago truncatula
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Trifolieae; Medicago
Family bZIP
Protein Properties Length: 390aa    MW: 42175.8 Da    PI: 6.6899
Description bZIP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Medtr7g115120.1genomeMtView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1bZIP_151.42.4e-16193246356
                      XXCHHHCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH CS
           bZIP_1   3 elkrerrkqkNReAArrsRqRKkaeieeLeekvkeLeaeNkaLkkeleelkkev 56 
                      + kr rr+ +NRe+ArrsR+RK+a + eLe+ v eL +eN++L k+l   +++ 
  Medtr7g115120.1 193 DAKRVRRMLSNRESARRSRRRKQAHLTELETQVSELRGENSSLLKRLTDVTQKF 246
                      579*****************************************9998777765 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM003385.8E-20191255IPR004827Basic-leucine zipper domain
Gene3DG3DSA:1.20.5.1704.2E-13192247No hitNo description
PROSITE profilePS5021711.668193247IPR004827Basic-leucine zipper domain
PfamPF001701.6E-14194244IPR004827Basic-leucine zipper domain
SuperFamilySSF579595.63E-12195245No hitNo description
PROSITE patternPS000360198213IPR004827Basic-leucine zipper domain
PfamPF124984.2E-38262385IPR020983Basic leucine-zipper, C-terminal
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 390 aa     Download sequence    Send to blast
MERVLSIAEI TEQYWLTSKA CKGGDTKMNR SDSEWAFQKF LREQEAAEEA EAATAKPSSS  60
STSTSTSSST VDVNLKINNS IDSEDYQALL KTKLDLACAA VAKSRGSLVK SQDPDNGSQP  120
SYPYELGPLA TLKECGPSGN DPSKLQNKDI KVAVGVPCMP KKPAVTIKST TSGSSDDEEG  180
DGEINMNGDN PTDAKRVRRM LSNRESARRS RRRKQAHLTE LETQVSELRG ENSSLLKRLT  240
DVTQKFNNSA VDNRILKADV ETLRAKVKMA EETVKRFTGS NPVFNAMSEV SSMGMSLFDG  300
SPSESSADAS VPVQEDPNNH FFQPLPNHLM SSHDMRGANN RSGSIISSAE SGQNTPAGGN  360
KIGRTNSLPR VASLEHLQSR IRGGAEEDK*
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1207214RRSRRRKQ
2209214SRRRKQ
Expression -- UniGene ? help Back to Top
UniGene ID E-value Expressed in
Mtr.131440.0leaf| root| stem
Functional Description ? help Back to Top
Source Description
UniProtBinds to the G-box-like motif (5'-ACGTGGC-3') of the chalcone synthase (CHS) gene promoter. G-box and G-box-like motifs are defined in promoters of certain plant genes which are regulated by such diverse stimuli as light-induction or hormone control.
Cis-element ? help Back to Top
SourceLink
PlantRegMapMedtr7g115120.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankBT1348490.0BT134849.1 Medicago truncatula clone JCVI-FLMt-21G1 unknown mRNA.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_003626454.10.0light-inducible protein CPRF2
SwissprotQ990901e-107CPRF2_PETCR; Light-inducible protein CPRF2
TrEMBLG7L1X50.0G7L1X5_MEDTR; Putative transcription factor bZIP family
STRINGAES826730.0(Medicago truncatula)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF41763358
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G28770.23e-61bZIP family protein
Publications ? help Back to Top
  1. Weisshaar B,Armstrong GA,Block A,da Costa e Silva O,Hahlbrock K
    Light-inducible and constitutively expressed DNA-binding proteins recognizing a plant promoter element with functional relevance in light responsiveness.
    EMBO J., 1991. 10(7): p. 1777-86
    [PMID:2050115]
  2. Young ND, et al.
    The Medicago genome provides insight into the evolution of rhizobial symbioses.
    Nature, 2011. 480(7378): p. 520-4
    [PMID:22089132]