PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Medtr7g116270.1
Common NameMTR_7g116270
Organism
Medicago truncatula
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Trifolieae; Medicago
Family Whirly
Protein Properties Length: 227aa    MW: 25175.8 Da    PI: 9.5507
Description Whirly family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Medtr7g116270.1genomeMtView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Whirly193.43.4e-60521861137
           Whirly   1 svyktkaalkvkavrptfealdsgnlklkraGglllelanataerkydWekkqsfalsatevaelvdlaskesceffhdpaakgsneGkvrkal 94 
                      svyk+kaa+++ + +ptf++ldsg+l+++r+G++++ +++a++erkydWek+q falsatev++l+ +++++sceffhdp++k+sn+G+vrk+l
  Medtr7g116270.1  52 SVYKGKAAFSLSPCLPTFTKLDSGALVVDRHGSIMMSFMPAIGERKYDWEKRQIFALSATEVGSLIAIGPQDSCEFFHDPSMKSSNAGQVRKSL 145
                      79******************************************************************************************** PP

           Whirly  95 kvePlpdGsGlfvnlsvtnslvkgnesfsvPvskaefavlrsl 137
                      +++P+++  G+fv+lsv ns+++++++fsvPv+ aefav++++
  Medtr7g116270.1 146 SIKPHSN--GYFVSLSVVNSVLNTKDNFSVPVTTAEFAVMKTA 186
                      ****986..7*******************************97 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:2.30.31.104.0E-7440206IPR009044ssDNA-binding transcriptional regulator
SuperFamilySSF544476.51E-6344207IPR009044ssDNA-binding transcriptional regulator
PfamPF085365.0E-5853185IPR013742Plant transcription factor
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006281Biological ProcessDNA repair
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005739Cellular Componentmitochondrion
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 227 aa     Download sequence    Send to blast
MVPKMLKFSR MLHSSSRNHL LEVLYARDFS TATNNNYSAK GYTSDRIFAP YSVYKGKAAF  60
SLSPCLPTFT KLDSGALVVD RHGSIMMSFM PAIGERKYDW EKRQIFALSA TEVGSLIAIG  120
PQDSCEFFHD PSMKSSNAGQ VRKSLSIKPH SNGYFVSLSV VNSVLNTKDN FSVPVTTAEF  180
AVMKTACSFA LPHIMGWDRL TNQQSSGTVS FQPKMNSQIL DLEWEK*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
4kop_A2e-86442038169Single-stranded DNA-binding protein WHY2, mitochondrial
4kop_B2e-86442038169Single-stranded DNA-binding protein WHY2, mitochondrial
4kop_C2e-86442038169Single-stranded DNA-binding protein WHY2, mitochondrial
4kop_D2e-86442038169Single-stranded DNA-binding protein WHY2, mitochondrial
Search in ModeBase
Expression -- UniGene ? help Back to Top
UniGene ID E-value Expressed in
Mtr.141100.0root| seed
Functional Description ? help Back to Top
Source Description
UniProtSingle-stranded DNA-binding protein that may be involved in the maintenance of mitochondrial genome stability by preventing break-induced DNA rearrangements. {ECO:0000269|PubMed:21911368}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapMedtr7g116270.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankBT1368330.0BT136833.1 Medicago truncatula clone JCVI-FLMt-6C3 unknown mRNA.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_003626470.11e-170single-stranded DNA-binding protein WHY2, mitochondrial
SwissprotD9J0349e-91WHY2_SOLTU; Single-stranded DNA-binding protein WHY2, mitochondrial
TrEMBLG7L2W41e-168G7L2W4_MEDTR; Putative transcription factor ssDNA-binding-TF family
STRINGAES826881e-169(Medicago truncatula)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF113833338
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G71260.12e-84WHIRLY 2
Publications ? help Back to Top
  1. Young ND, et al.
    The Medicago genome provides insight into the evolution of rhizobial symbioses.
    Nature, 2011. 480(7378): p. 520-4
    [PMID:22089132]