PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Medtr7g116460.1
Common NameMTR_7g116460
Organism
Medicago truncatula
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Trifolieae; Medicago
Family NAC
Protein Properties Length: 207aa    MW: 23610.7 Da    PI: 9.2657
Description NAC family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Medtr7g116460.1genomeMtView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1NAM66.48.5e-21111377128
              NAM   7 FhPtdeelvveyLkkkvegkkleleevikevdiykv..ePwdLpk....kvkaeekewyfFskrdkkyatgkrknratksgyWkatgkdkevls 94 
                      F Ptd+el+  +L +++++++++   +i + +++ +  +Pw++ +    +++   k++yfF++ +kk+at+kr  r++ sg+W+   + k +++
  Medtr7g116460.1  11 FTPTDDELIRSFLYNRIHNNPVPNYITILDYELFGIvkNPWEIWEefapSHSYCGKDLYFFTTLKKKSATSKRLIRTIGSGTWEGEDTGKGIVA 104
                      9********************999888999999876669****642444333356789**************************9999889888 PP

              NAM  95 k.kgelvglkktLvfykgrapkgektdWvmheyrl 128
                      k ++++ g+kk + f   ++++ +   W++hey+l
  Medtr7g116460.1 105 KeTNKVLGIKKRFRFG--KSNTFHDGAWILHEYNL 137
                      7577789********6..6777779********98 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5100524.7645158IPR003441NAC domain
PfamPF023651.4E-1410137IPR003441NAC domain
SuperFamilySSF1019414.05E-2410156IPR003441NAC domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 207 aa     Download sequence    Send to blast
MTLNSRSNND FTPTDDELIR SFLYNRIHNN PVPNYITILD YELFGIVKNP WEIWEEFAPS  60
HSYCGKDLYF FTTLKKKSAT SKRLIRTIGS GTWEGEDTGK GIVAKETNKV LGIKKRFRFG  120
KSNTFHDGAW ILHEYNLDKS LINNTLANNY VLCRFRKNLK INQHQSNSHL MNSIGIPRIN  180
VELDGQGKTV VPGHAENDIS VIDYVA*
Cis-element ? help Back to Top
SourceLink
PlantRegMapMedtr7g116460.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_024626902.11e-147NAC domain-containing protein 101
TrEMBLG7L2Y21e-151G7L2Y2_MEDTR; NAC transcription factor-like protein
STRINGAES827061e-148(Medicago truncatula)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF55724133
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G15510.14e-16NAC domain containing protein 2
Publications ? help Back to Top
  1. Young ND, et al.
    The Medicago genome provides insight into the evolution of rhizobial symbioses.
    Nature, 2011. 480(7378): p. 520-4
    [PMID:22089132]