PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Medtr7g117590.1
Common NameMTR_7g117590
Organism
Medicago truncatula
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Trifolieae; Medicago
Family B3
Protein Properties Length: 176aa    MW: 19959.3 Da    PI: 4.4163
Description B3 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Medtr7g117590.1genomeMtView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1B335.51.8e-111021722698
                      T---..--SEEEEEETTS-EEEEEE..EEETTE..EEE-TTHHHHHHHHT--TT-EEEEEE-SSSEE..EEEEE- CS
               B3  26 hggkkeesktltledesgrsWevkliyrkksgr..yvltkGWkeFvkangLkegDfvvFkldgrsefelvvkvfr 98 
                       +++ ++sk  ++ de+g+++e ++  r k+++   + ++GW +Fv++++Lk gD + F+ d +   +l+v v+r
  Medtr7g117590.1 102 SMYV-NQSKIRVVDDETGEEYECEV--RDKGNWteKYVRSGWVDFVREKELKHGDLLFFTID-NPPHKLFVLVIR 172
                      4445.3554445566**********..66666666899**********************65.588888999887 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF023628.1E-9105172IPR003340B3 DNA binding domain
Gene3DG3DSA:2.40.330.105.3E-8106162IPR015300DNA-binding pseudobarrel domain
SuperFamilySSF1019361.24E-8108169IPR015300DNA-binding pseudobarrel domain
PROSITE profilePS508639.347109174IPR003340B3 DNA binding domain
CDDcd100175.80E-9112172No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0016021Cellular Componentintegral component of membrane
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 176 aa     Download sequence    Send to blast
MSSSAPSSSN RCCCNCSDVI DPELEELMPN FHPLPVDENP NEEEVDGPVF AQFQNFQNGD  60
HTWMHNISSD AAVGSFLVDF YFIFAGLFAH GIFIRKLQAV QSMYVNQSKI RVVDDETGEE  120
YECEVRDKGN WTEKYVRSGW VDFVREKELK HGDLLFFTID NPPHKLFVLV IRGGS*
Cis-element ? help Back to Top
SourceLink
PlantRegMapMedtr7g117590.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAC1302004e-75AC130200.30 Medicago truncatula clone mth1-64n13, complete sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
TrEMBLA0A072U4K31e-128A0A072U4K3_MEDTR; B3 DNA-binding domain protein
STRINGAES986725e-29(Medicago truncatula)
Publications ? help Back to Top
  1. Young ND, et al.
    The Medicago genome provides insight into the evolution of rhizobial symbioses.
    Nature, 2011. 480(7378): p. 520-4
    [PMID:22089132]