PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Medtr7g117670.1
Common NameMTR_7g117670
Organism
Medicago truncatula
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Trifolieae; Medicago
Family bHLH
Protein Properties Length: 575aa    MW: 64370.4 Da    PI: 6.434
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Medtr7g117670.1genomeMtView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH40.64.7e-13402448455
                      HHHHHHHHHHHHHHHHHHHHHCTSCC.C...TTS-STCHHHHHHHHHHHHHHH CS
              HLH   4 ahnerErrRRdriNsafeeLrellPk.askapskKlsKaeiLekAveYIksLq 55 
                      +h e+Er+RR+++N++f  Lr ++P+ +      K++Ka+ L  A+ YI++Lq
  Medtr7g117670.1 402 NHVEAERQRREKLNQRFYALRAVVPNiS------KMDKASLLGDAIAYINELQ 448
                      799***********************66......******************9 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF142154.2E-5050245IPR025610Transcription factor MYC/MYB N-terminal
PROSITE profilePS5088817.047398447IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
CDDcd000831.34E-14401452No hitNo description
SuperFamilySSF474593.27E-18401461IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PfamPF000101.7E-10402448IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene3DG3DSA:4.10.280.101.1E-17402461IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SMARTSM003531.9E-16404453IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 575 aa     Download sequence    Send to blast
MGSIRRMIWN EEEKTMVEAV LGARALDFLI NNCLSNESGL IAVGESVDSL QNKLSDLVEN  60
SSSNFNWNYA IYWRLSKSKS GDYVLCWADG CCREPNEEEG GGGGVRETMS LRIEEEKKEE  120
EEEEEGMKQS MKKWVLQKLH KAFGGSDEDN YAFGLDRVTD TEMFFLASMY FFFPKGYGGP  180
GKCFASGKHL WFKSVSDYCF RSFLAKSAGI QTVVLVPTDF GVVELGSVRL LPEIFDLLNK  240
IKSLFSISKP LYPKVVNEES SVSIPKLVLN LNNGRTHFRE KLAIRKMDSN NVNNNNSINF  300
PSARNGICGS SWGVNQGQGE IFASNGVRKD FRLNNNNSNY QPQRQMPMQI DFSGANSRAN  360
SVRPVIAESE LVADVEADQP SDERRPRKRG RKPANGRDEP LNHVEAERQR REKLNQRFYA  420
LRAVVPNISK MDKASLLGDA IAYINELQAK LKIMESERES FGSSTSRDGL ANSRSENRHQ  480
NTRVPPPDVD IQASQDEVIV KVSCSLDTHP VSKVIETFKE AQISVVESKL AAANDTIYHN  540
FVIKSEGSEQ LTKDKLIAAF TRESNSLQTQ TLSI*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5gnj_A2e-29396458264Transcription factor MYC2
5gnj_B2e-29396458264Transcription factor MYC2
5gnj_E2e-29396458264Transcription factor MYC2
5gnj_F2e-29396458264Transcription factor MYC2
5gnj_G2e-29396458264Transcription factor MYC2
5gnj_I2e-29396458264Transcription factor MYC2
5gnj_M2e-29396458264Transcription factor MYC2
5gnj_N2e-29396458264Transcription factor MYC2
Search in ModeBase
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1383391RRPRKRGRK
Expression -- UniGene ? help Back to Top
UniGene ID E-value Expressed in
Mtr.261550.0root
Functional Description ? help Back to Top
Source Description
UniProtTranscription factor that negatively regulates jasmonate (JA) signaling (PubMed:30610166). Negatively regulates JA-dependent response to wounding, JA-induced expression of defense genes, JA-dependent responses against herbivorous insects, and JA-dependent resistance against Botrytis cinerea infection (PubMed:30610166). Plays a positive role in resistance against the bacterial pathogen Pseudomonas syringae pv tomato DC3000 (PubMed:30610166). {ECO:0000269|PubMed:30610166}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapMedtr7g117670.1
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: Induced by wounding, feeding with herbivorous insects, infection with the fungal pathogen Botrytis cinerea and infection with the bacterial pathogen Pseudomonas syringae pv tomato DC3000. {ECO:0000269|PubMed:30610166}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_013450654.10.0transcription factor bHLH13
SwissprotA0A3Q7ELQ20.0MTB1_SOLLC; Transcription factor MTB1
TrEMBLA0A072U4Q40.0A0A072U4Q4_MEDTR; ABA-inducible bHLH-type transcription factor
STRINGXP_004494832.10.0(Cicer arietinum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF54483254
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G01260.31e-151bHLH family protein
Publications ? help Back to Top
  1. Young ND, et al.
    The Medicago genome provides insight into the evolution of rhizobial symbioses.
    Nature, 2011. 480(7378): p. 520-4
    [PMID:22089132]
  2. Tomato Genome Consortium
    The tomato genome sequence provides insights into fleshy fruit evolution.
    Nature, 2012. 485(7400): p. 635-41
    [PMID:22660326]
  3. Sun H,Fan HJ,Ling HQ
    Genome-wide identification and characterization of the bHLH gene family in tomato.
    BMC Genomics, 2015. 16: p. 9
    [PMID:25612924]
  4. Liu Y, et al.
    MYC2 Regulates the Termination of Jasmonate Signaling via an Autoregulatory Negative Feedback Loop.
    Plant Cell, 2019. 31(1): p. 106-127
    [PMID:30610166]