PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Medtr7g117705.1
Common NameMTR_7g117705
Organism
Medicago truncatula
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Trifolieae; Medicago
Family ARR-B
Protein Properties Length: 462aa    MW: 52424.4 Da    PI: 8.7344
Description ARR-B family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Medtr7g117705.1genomeMtView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1G2-like83.32.6e-26191244155
          G2-like   1 kprlrWtpeLHerFveaveqLGGsekAtPktilelmkvkgLtlehvkSHLQkYRl 55 
                      kpr++W+++LH++F+ +v++L G+e+A+Pk+ilelm+v+ Lt+++v+SHLQkYRl
  Medtr7g117705.1 191 KPRVVWSNDLHRKFLAVVNEL-GIENAIPKKILELMNVENLTRDNVASHLQKYRL 244
                      79*******************.********************************8 PP
2Response_reg745.7e-25111171106
                      EEEESSSHHHHHHHHHHHHHTTCEEEEEESSHHHHHHHHHHHH...ESEEEEESSCTTSEHHHHHHHHHHHTTTSEEEEEESTTTHHHHHHHHH CS
     Response_reg   1 vlivdDeplvrellrqalekegyeevaeaddgeealellkekd...pDlillDiempgmdGlellkeireeepklpiivvtahgeeedalealk 91 
                      vl vdD+++ +++l+++l++ +y +v++a++++ al+ll +++   +Dl++  + mp+mdG++ll+     e++lp+iv++a++++ ++ + ++
  Medtr7g117705.1  11 VLAVDDDRTCLKVLERLLQRCQY-HVTTAQSARTALNLLLRENknnFDLVISNVHMPDMDGFKLLELVGL-EMDLPVIVFSANDDPRMVMKGID 102
                      799********************.***************4444456*******************87754.558******************** PP

                      TTESEEEESS--HHH CS
     Response_reg  92 aGakdflsKpfdpee 106
                       Ga d+l Kp+  +e
  Medtr7g117705.1 103 HGACDYLLKPVTLKE 117
                      **********98876 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PIRSFPIRSF0363922.6E-1371439IPR017053Response regulator B-type, plant
Gene3DG3DSA:3.40.50.23008.3E-408161No hitNo description
SuperFamilySSF521728.97E-348134IPR011006CheY-like superfamily
SMARTSM004487.7E-299122IPR001789Signal transduction response regulator, receiver domain
PROSITE profilePS5011040.33410126IPR001789Signal transduction response regulator, receiver domain
PfamPF000724.7E-2211118IPR001789Signal transduction response regulator, receiver domain
CDDcd001569.81E-2612126No hitNo description
PROSITE profilePS5129411.273188247IPR017930Myb domain
Gene3DG3DSA:1.10.10.603.3E-27188247IPR009057Homeodomain-like
SuperFamilySSF466894.3E-19189248IPR009057Homeodomain-like
TIGRFAMsTIGR015571.9E-24191244IPR006447Myb domain, plants
PfamPF002491.7E-5193243IPR001005SANT/Myb domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0000160Biological Processphosphorelay signal transduction system
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 462 aa     Download sequence    Send to blast
MNDKFPIGMR VLAVDDDRTC LKVLERLLQR CQYHVTTAQS ARTALNLLLR ENKNNFDLVI  60
SNVHMPDMDG FKLLELVGLE MDLPVIVFSA NDDPRMVMKG IDHGACDYLL KPVTLKEVQM  120
IWQHVIRKKK TSKRSNHDVP NFDSGNVIDS AVTRNSDQNE KPTRKRKDMN DDIEEENEDD  180
HDNDDPTAQK KPRVVWSNDL HRKFLAVVNE LGIENAIPKK ILELMNVENL TRDNVASHLQ  240
KYRLYLKGIS SGENQQANTS HSRFSSLTRV GGHFHTLNNP RQFHNHNSAF RPFPASVNMH  300
GFPTHNLNHS AKITLSFNRP KLMPIRTMFN DIWSSTMQLP ETNSYLPEGG TFNSTSNVPF  360
QGWNKNHNNY VIGNSIGSST TPVVNVVERE EGPSTKPYEA YMMSNKMECK SSCISDDICS  420
LEDVIKVMTK QVLRRRPPSL IGYPPSTAKQ LYANYSGGKS K*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1irz_A1e-23187250164ARR10-B
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtTranscriptional activator that binds specific DNA sequence. Functions as a response regulator involved in His-to-Asp phosphorelay signal transduction system. Phosphorylation of the Asp residue in the receiver domain activates the ability of the protein to promote the transcription of target genes. May directly activate some type-A response regulators in response to cytokinins. {ECO:0000250|UniProtKB:Q940D0}.
UniProtTranscriptional activator that binds specific DNA sequence. Functions as a response regulator involved in His-to-Asp phosphorelay signal transduction system. Phosphorylation of the Asp residue in the receiver domain activates the ability of the protein to promote the transcription of target genes. May directly activate some type-A response regulators in response to cytokinins. {ECO:0000250|UniProtKB:Q940D0}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapMedtr7g117705.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_024626906.10.0two-component response regulator ARR10
SwissprotA2X1N21e-107ORR24_ORYSI; Two-component response regulator ORR24
SwissprotQ6H8051e-107ORR24_ORYSJ; Two-component response regulator ORR24
TrEMBLA0A072U4L80.0A0A072U4L8_MEDTR; Two-component response regulator
STRINGXP_004498785.11e-160(Cicer arietinum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF1744167
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G25180.11e-100response regulator 12
Publications ? help Back to Top
  1. Kikuchi S, et al.
    Collection, mapping, and annotation of over 28,000 cDNA clones from japonica rice.
    Science, 2003. 301(5631): p. 376-9
    [PMID:12869764]
  2. Young ND, et al.
    The Medicago genome provides insight into the evolution of rhizobial symbioses.
    Nature, 2011. 480(7378): p. 520-4
    [PMID:22089132]