PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Medtr7g446520.1
Common NameMTR_7g446520
Organism
Medicago truncatula
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Trifolieae; Medicago
Family FAR1
Protein Properties Length: 335aa    MW: 37689.3 Da    PI: 6.9631
Description FAR1 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Medtr7g446520.1genomeMtView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1FAR127.21.3e-08102174190
             FAR1   1 kfYneYAkevGFsvrkskskkskrngeitkrtfvCskegkreeekkktekerrtraetrtgCkaklkvkkek.dgkwevtkleleHnHela 90 
                      +fY +Y+k   F vrks  ++  ++g i++r++vC+k+g+re+++ +                 +l+v+ +  +g+++v  +e+ HnHel+
  Medtr7g446520.1 102 DFYFKYGKCKCFAVRKSDIRRDVNDG-IVMRQYVCNKQGFREKKHLS-----------------RLRVHYRPkKGRYVVFIFEEGHNHELT 174
                      6********************97777.9**************99877.................677777766899999999999999987 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF031019.3E-6102173IPR004330FAR1 DNA binding domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 335 aa     Download sequence    Send to blast
MLKLHEKQSM TQVWSHGNFS QNSKGNTGAD CFDESGDNES DDGGCSGDYS AGDESEGHGS  60
EGNKNLDEND DAVVGEEMVK INSLTAEGIR EIEFASVDKA YDFYFKYGKC KCFAVRKSDI  120
RRDVNDGIVM RQYVCNKQGF REKKHLSRLR VHYRPKKGRY VVFIFEEGHN HELTPSSVVH  180
LHPVSRKISE VDKAQIDGLQ SHGIRTCHIM GYLVAQKGGY PSVGFTKKYL YNCFDKKMHV  240
VIKDGDVYAA LNYLNVKSST DPHSFGVYSS TDDGRLKCLF WEDGTSKSSY FCFGVVVAFD  300
TTYKKKKIQI SVGDFFWLQP PLTDCYIWCC IGDG*
Cis-element ? help Back to Top
SourceLink
PlantRegMapMedtr7g446520.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_024640473.11e-105protein FAR1-RELATED SEQUENCE 5-like
TrEMBLA0A072TZ240.0A0A072TZ24_MEDTR; FAR1 DNA-binding domain protein
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF3290752
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G38180.11e-25FAR1-related sequence 5
Publications ? help Back to Top
  1. Young ND, et al.
    The Medicago genome provides insight into the evolution of rhizobial symbioses.
    Nature, 2011. 480(7378): p. 520-4
    [PMID:22089132]