PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Medtr8g006410.1
Common NameMTR_8g006410
Organism
Medicago truncatula
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Trifolieae; Medicago
Family ERF
Protein Properties Length: 208aa    MW: 23121.4 Da    PI: 5.668
Description ERF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Medtr8g006410.1genomeMtView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP256.28.3e-1851101256
              AP2   2 gykGVrwdkkrgrWvAeIrdpsengkrkrfslgkfgtaeeAakaaiaarkklege 56 
                       y+GVr +  +g++v+eIr+p++   + r++lg++ tae+Aa+a++ a+++++g+
  Medtr8g006410.1  51 TYRGVRKRN-WGKFVCEIREPKK---KSRIWLGTYPTAEMAARAHDVAALAIKGH 101
                      69****887.**********854...6***********************99986 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:3.30.730.109.4E-3251109IPR001471AP2/ERF domain
PROSITE profilePS5103222.65551108IPR001471AP2/ERF domain
SMARTSM003803.1E-3451114IPR001471AP2/ERF domain
PfamPF008479.1E-1351101IPR001471AP2/ERF domain
SuperFamilySSF541713.33E-2151109IPR016177DNA-binding domain
CDDcd000183.37E-3152110No hitNo description
PRINTSPR003674.6E-105263IPR001471AP2/ERF domain
PRINTSPR003674.6E-107490IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 208 aa     Download sequence    Send to blast
MEKHINMESD ADDTSSTPSF SSSTSSNSDT KEESKKRQRS TEVENNSTHP TYRGVRKRNW  60
GKFVCEIREP KKKSRIWLGT YPTAEMAARA HDVAALAIKG HSAYLNFPEL VQQLPKPIST  120
STKDIQAAAA KAANTVFVAE PIQEEHFSSS SSTFTNNDDA TLFDLPDLFP DDGNNGLCSY  180
SSKNSSWYLC AVDSGFRLEE PSFWEKY*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5wx9_A6e-1846108972Ethylene-responsive transcription factor ERF096
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtProbably acts as a transcriptional activator. Binds to the GCC-box pathogenesis-related promoter element. May be involved in the regulation of gene expression by stress factors and by components of stress signal transduction pathways (By similarity). {ECO:0000250}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapMedtr8g006410.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAC1445912e-46AC144591.11 Medicago truncatula clone mth2-5f17, complete sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_003626728.11e-154ethylene-responsive transcription factor ERF034
SwissprotQ8LBQ72e-56ERF34_ARATH; Ethylene-responsive transcription factor ERF034
TrEMBLG7LBN21e-153G7LBN2_MEDTR; Ethylene response factor
STRINGAET012041e-154(Medicago truncatula)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF19234263
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G44940.15e-42ERF family protein
Publications ? help Back to Top
  1. Duarte JM, et al.
    Expression pattern shifts following duplication indicative of subfunctionalization and neofunctionalization in regulatory genes of Arabidopsis.
    Mol. Biol. Evol., 2006. 23(2): p. 469-78
    [PMID:16280546]
  2. Young ND, et al.
    The Medicago genome provides insight into the evolution of rhizobial symbioses.
    Nature, 2011. 480(7378): p. 520-4
    [PMID:22089132]
  3. Ding Y, et al.
    Four distinct types of dehydration stress memory genes in Arabidopsis thaliana.
    BMC Plant Biol., 2013. 13: p. 229
    [PMID:24377444]