PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Medtr8g006705.1
Common NameMTR_8g006705
Organism
Medicago truncatula
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Trifolieae; Medicago
Family HD-ZIP
Protein Properties Length: 306aa    MW: 33363 Da    PI: 7.7712
Description HD-ZIP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Medtr8g006705.1genomeMtView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Homeobox58.98.3e-19145199256
                      T--SS--HHHHHHHHHHHHHSSS--HHHHHHHHHHCTS-HHHHHHHHHHHHHHHH CS
         Homeobox   2 rkRttftkeqleeLeelFeknrypsaeereeLAkklgLterqVkvWFqNrRakek 56 
                      rk+ +++keq   Lee F+++++++ ++++ LAk+l+L+ rqV vWFqNrRa+ k
  Medtr8g006705.1 145 RKKLRLSKEQSMLLEETFKEHNTLNPKQKQALAKQLNLKPRQVEVWFQNRRARTK 199
                      788899***********************************************98 PP
2HD-ZIP_I/II126.71e-40145234191
      HD-ZIP_I/II   1 ekkrrlskeqvklLEesFeeeekLeperKvelareLglqprqvavWFqnrRARtktkqlEkdyeaLkraydalkeenerLekeveeLreel 91 
                      +kk+rlskeq+ lLEe+F+e+++L+p++K++la++L+l+prqv+vWFqnrRARtk+kq+E+d+e+Lkr++++l++en+rL+kev+eLr +l
  Medtr8g006705.1 145 RKKLRLSKEQSMLLEETFKEHNTLNPKQKQALAKQLNLKPRQVEVWFQNRRARTKLKQTEVDCEYLKRCCETLTDENRRLQKEVQELR-AL 234
                      69*************************************************************************************9.55 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF046184.3E-271109IPR006712HD-ZIP protein, N-terminal
SuperFamilySSF466891.88E-19129202IPR009057Homeodomain-like
Gene3DG3DSA:1.10.10.604.3E-19138200IPR009057Homeodomain-like
PROSITE profilePS5007117.702141201IPR001356Homeobox domain
SMARTSM003895.1E-16143205IPR001356Homeobox domain
PfamPF000464.3E-16145199IPR001356Homeobox domain
CDDcd000861.04E-15145202No hitNo description
PROSITE patternPS000270176199IPR017970Homeobox, conserved site
PfamPF021833.5E-11201235IPR003106Leucine zipper, homeobox-associated
SMARTSM003403.8E-27201244IPR003106Leucine zipper, homeobox-associated
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 306 aa     Download sequence    Send to blast
MGEKDDEFSL GLSLSLGFGE YANNNNQTPL KVSHMHKPPQ TVTNQRVSFN NLFHFHDLST  60
ETRSFLRGID GNTPLPSTAA TAAAFDDENG VSSPNSTVSS ISGKRSEREG NGDENDAVER  120
GSCSRGGGSD DDDGGGCGGD GDSSRKKLRL SKEQSMLLEE TFKEHNTLNP KQKQALAKQL  180
NLKPRQVEVW FQNRRARTKL KQTEVDCEYL KRCCETLTDE NRRLQKEVQE LRALKLSPQL  240
YMQMNPPTTL TMCPSCERVA VSSASSSSAA AAPPSASANP SGPSVQRPTP VNPWASMSIQ  300
NRSRP*
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1143149SRKKLRL
2193201RRARTKLKQ
Expression -- UniGene ? help Back to Top
UniGene ID E-value Expressed in
Mtr.118390.0root| stem
Functional Description ? help Back to Top
Source Description
UniProtProbable transcription factor. {ECO:0000250}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapMedtr8g006705.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAC2358922e-53AC235892.2 Glycine max clone GM_WBc0089E01, complete sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_013443795.10.0homeobox-leucine zipper protein HAT3
SwissprotP466021e-102HAT3_ARATH; Homeobox-leucine zipper protein HAT3
TrEMBLA0A072TWD70.0A0A072TWD7_MEDTR; Homeobox associated leucine zipper protein
STRINGXP_004515372.11e-147(Cicer arietinum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF123934105
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G60390.13e-72homeobox-leucine zipper protein 3
Publications ? help Back to Top
  1. Young ND, et al.
    The Medicago genome provides insight into the evolution of rhizobial symbioses.
    Nature, 2011. 480(7378): p. 520-4
    [PMID:22089132]
  2. Ding Y, et al.
    Four distinct types of dehydration stress memory genes in Arabidopsis thaliana.
    BMC Plant Biol., 2013. 13: p. 229
    [PMID:24377444]
  3. Zou LJ, et al.
    Role of Transcription Factor HAT1 in Modulating Arabidopsis thaliana Response to Cucumber mosaic virus.
    Plant Cell Physiol., 2016. 57(9): p. 1879-89
    [PMID:27328697]
  4. Caggiano MP, et al.
    Cell type boundaries organize plant development.
    Elife, 2018.
    [PMID:28895530]