PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Medtr8g009330.1
Common NameMTR_8g009330
Organism
Medicago truncatula
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Trifolieae; Medicago
Family FAR1
Protein Properties Length: 233aa    MW: 26509.3 Da    PI: 9.3582
Description FAR1 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Medtr8g009330.1genomeMtView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1FAR130.71.1e-09107184790
             FAR1   7 AkevGFsvrkskskkskrngeitkrtfvCskegkreeekkktekerrtraetrtgCkaklkvkkek.dgkwevtkleleHnHela 90 
                      A++vGF++++++s+         + ++vC ++g ++  kkk   +r ++ + ++gC   +   ++k +++w+++ ++  HnH++ 
  Medtr8g009330.1 107 ANKVGFTIVTQRSSLI-----NPMFRLVCERSGAHKVPKKK--PKRARTDSRKCGCLFVISGYQSKqTNEWRLNIFNGVHNHAME 184
                      899****999876665.....34889**********99998..999999999999999998666556***************986 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF031015.1E-7107184IPR004330FAR1 DNA binding domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 233 aa     Download sequence    Send to blast
MGIYVRYVEL CHGKPRQTSV VYLIVENAED VPGEKKPNFV EFSGDVKPPM VEAKLKTDGA  60
SIHVEASKYV GFNVLPLQAH EVDTTRFFSD VKSKDREELL EWARRQANKV GFTIVTQRSS  120
LINPMFRLVC ERSGAHKVPK KKPKRARTDS RKCGCLFVIS GYQSKQTNEW RLNIFNGVHN  180
HAMEPTLEGH ILAGRLKEDD KKIVQQDASK KYFDTFEEQK ITLHDKCEAS VQ*
Expression -- UniGene ? help Back to Top
UniGene ID E-value Expressed in
Mtr.248521e-173glandular trichome
Cis-element ? help Back to Top
SourceLink
PlantRegMapMedtr8g009330.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAC2296960.0AC229696.12 Medicago truncatula clone mth2-20h11, complete sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_024642241.11e-28uncharacterized protein LOC112422801
TrEMBLA0A072TLA11e-174A0A072TLA1_MEDTR; FAR1 DNA-binding domain protein
STRINGAES763151e-108(Medicago truncatula)
Publications ? help Back to Top
  1. Young ND, et al.
    The Medicago genome provides insight into the evolution of rhizobial symbioses.
    Nature, 2011. 480(7378): p. 520-4
    [PMID:22089132]