PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Medtr8g013950.1
Common NameMTR_8g013950
Organism
Medicago truncatula
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Trifolieae; Medicago
Family GATA
Protein Properties Length: 343aa    MW: 37628.5 Da    PI: 6.5038
Description GATA family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Medtr8g013950.1genomeMtView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1GATA57.71.6e-18228262135
             GATA   1 CsnCgttkTplWRrgpdgnktLCnaCGlyyrkkgl 35 
                      C +Cgt kTp+WR gp g+ktLCnaCG+++++ +l
  Medtr8g013950.1 228 CLHCGTDKTPQWRTGPMGPKTLCNACGVRFKSGRL 262
                      99*****************************9885 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PIRSFPIRSF0169922.0E-7421318IPR016679Transcription factor, GATA, plant
SMARTSM004011.6E-17222272IPR000679Zinc finger, GATA-type
PROSITE profilePS5011412.426222258IPR000679Zinc finger, GATA-type
SuperFamilySSF577166.18E-15225285No hitNo description
Gene3DG3DSA:3.30.50.109.9E-15226260IPR013088Zinc finger, NHR/GATA-type
CDDcd002029.31E-15227274No hitNo description
PROSITE patternPS003440228253IPR000679Zinc finger, GATA-type
PfamPF003202.9E-16228262IPR000679Zinc finger, GATA-type
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0045893Biological Processpositive regulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0008270Molecular Functionzinc ion binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 343 aa     Download sequence    Send to blast
MEAQDYFVGG YYGAGENQFS PEKRHGDQKP PCEPFAIDDL LDFSNADVIM SDGFFDNNVA  60
GNSTDSSNVT AVDSCNSSGS GGDNRFGGTI VPYGFSGDVQ LTGELCVPYD DMAELEWLSN  120
FVEDSYSAEE ELKTLQLLSG AGAVKPQTPE SSSSTDTLPS FSTDETARNA SFLRPETPLP  180
GKARSKRSRA APGDWSTRLL HLPDAPPKNY PIVKKREDPN VECSGRKCLH CGTDKTPQWR  240
TGPMGPKTLC NACGVRFKSG RLVPEYRPAA SPTFVSAKHS NSHRKVLELR RQKEMQRSSQ  300
HHHHHQHQQL LSHSSIFGVS SNGGDDFINY HHHCGPEFRH VI*
Functional Description ? help Back to Top
Source Description
UniProtTranscriptional activator that specifically binds 5'-GATA-3' or 5'-GAT-3' motifs within gene promoters. May be involved in the regulation of some light-responsive genes (By similarity). {ECO:0000250}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapMedtr8g013950.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAC1660460.0AC166046.15 Medicago truncatula chromosome 8 clone mth2-6p7, complete sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_003627002.10.0GATA transcription factor 9
SwissprotO826321e-80GATA9_ARATH; GATA transcription factor 9
TrEMBLG7LFY20.0G7LFY2_MEDTR; GATA transcription factor
STRINGAET014780.0(Medicago truncatula)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF13643395
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G32890.12e-76GATA transcription factor 9
Publications ? help Back to Top
  1. Young ND, et al.
    The Medicago genome provides insight into the evolution of rhizobial symbioses.
    Nature, 2011. 480(7378): p. 520-4
    [PMID:22089132]
  2. Ding Y, et al.
    Four distinct types of dehydration stress memory genes in Arabidopsis thaliana.
    BMC Plant Biol., 2013. 13: p. 229
    [PMID:24377444]