PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Medtr8g013980.1

Common Name

MTR_8g013980

Organism

Medicago truncatula

Taxonomic ID

3880

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Trifolieae; Medicago

Family

HD-ZIP

Protein Properties

Length: 833aa MW: 91899.2 Da PI: 6.5753

Description

HD-ZIP family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Medtr8g013980.1	genome	Mt	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	Homeobox	58.9	8.3e-19	15	73	3	57
--SS--HHHHHHHHHHHHHSSS--HHHHHHHHHHC....TS-HHHHHHHHHHHHHHHHC CS Homeobox 3 kRttftkeqleeLeelFeknrypsaeereeLAkkl....gLterqVkvWFqNrRakekk 57 k ++t+eq+e+Le+l++++++ps +r++L +++ +++ rq+kvWFqNrR +ek+ Medtr8g013980.1 15 KYVRYTPEQVEALERLYHECPKPSSIRRQQLIRECpilsNIEPRQIKVWFQNRRCREKQ 73 5679*****************************************************97 PP
2	START	177.9	6.1e-56	156	364	2	205
HHHHHHHHHHHHHHHC-TT-EEEEEXCCTTEEEEEEESSS.SCEEEEEEEECCSCHHHHHHHHHCCCGGCT-TT-SEEEEEEEECTT..EEEEE CS START 2 laeeaaqelvkkalaeepgWvkssesengdevlqkfeeskvdsgealrasgvvdmvlallveellddkeqWdetlakaetlevissg..galql 93 +aee+++e+++ka+ ++ Wv+++ +++g++++ +++ s++++g a+ra+g+v +++ v+e+l+d++ W ++++++++++v+ ++ g+++l Medtr8g013980.1 156 IAEETLAEFLSKATGTAVEWVQMPGMKPGPDSIGIVAISHGCTGVAARACGLVGLEPT-RVAEILKDRPLWFRDCRAVDIVNVLPTAngGTIEL 248 7899****************************************************.8888888888************9999* PP EEEXXTTXX-SSX.EEEEEEEEEEE.TTS-EEEEEEEEE-TTS--....-TTSEE-EESSEEEEEEEECTCEEEEEEEE-EE--SSXXHHHHHH CS START 94 mvaelqalsplvp.RdfvfvRyirqlgagdwvivdvSvdseqkppe...sssvvRaellpSgiliepksnghskvtwvehvdlkgrlphwllrs 183 +++l+a+++l+p Rdf+ +Ry+ ++g++vi+++S+ ++q+ p+ +++vRa +lpSg+li+p+++g+s +++v+h+dl+ ++++++lr+ Medtr8g013980.1 249 LYMQLYAPTTLAPaRDFWLLRYTSVVEDGSLVICERSLKNTQNGPSmppVPHFVRADMLPSGYLIRPCEGGGSIIHIVDHMDLEPWSVPEVLRP 342 ****************************************999999**************************************** PP HHHHHHHHHHHHHHHHTXXXXX CS START 184 lvksglaegaktwvatlqrqce 205 l++s ++ ++kt++a+l+++++ Medtr8g013980.1 343 LYESPMVLAQKTTMAALRHLRQ 364 ***************99876 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS50071	15.58	10	74	IPR001356	Homeobox domain
SMART	SM00389	1.6E-15	12	78	IPR001356	Homeobox domain
SuperFamily	SSF46689	1.71E-16	14	76	IPR009057	Homeodomain-like
CDD	cd00086	4.72E-17	15	75	No hit	No description
Pfam	PF00046	2.2E-16	16	73	IPR001356	Homeobox domain
Gene3D	G3DSA:1.10.10.60	9.5E-19	17	73	IPR009057	Homeodomain-like
CDD	cd14686	2.19E-4	67	106	No hit	No description
PROSITE profile	PS50848	25.069	146	360	IPR002913	START domain
CDD	cd08875	4.15E-78	150	365	No hit	No description
SuperFamily	SSF55961	3.3E-38	155	365	No hit	No description
Gene3D	G3DSA:3.30.530.20	1.6E-22	155	361	IPR023393	START-like domain
SMART	SM00234	2.8E-41	155	365	IPR002913	START domain
Pfam	PF01852	1.3E-53	156	364	IPR002913	START domain
Pfam	PF08670	6.0E-51	689	831	IPR013978	MEKHLA

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0005634	Cellular Component	nucleus
GO:0003677	Molecular Function	DNA binding
GO:0008289	Molecular Function	lipid binding

Sequence ? help Back to Top
Protein Sequence Length: 833 aa Download sequence Send to blast
MACKDGNKHL MDNGKYVRYT PEQVEALERL YHECPKPSSI RRQQLIRECP ILSNIEPRQI 60 KVWFQNRRCR EKQRKESFRL QGVNRKLTAM NKLLMEENDR LQKQVSHLVY ENGYFRQNTQ 120 NATKDTSCDS VVTSGQHNMT SQHPPRDASP AGLLSIAEET LAEFLSKATG TAVEWVQMPG 180 MKPGPDSIGI VAISHGCTGV AARACGLVGL EPTRVAEILK DRPLWFRDCR AVDIVNVLPT 240 ANGGTIELLY MQLYAPTTLA PARDFWLLRY TSVVEDGSLV ICERSLKNTQ NGPSMPPVPH 300 FVRADMLPSG YLIRPCEGGG SIIHIVDHMD LEPWSVPEVL RPLYESPMVL AQKTTMAALR 360 HLRQISHEVS QPNVTGWGRR PAALRALSQR LSRGFNEALN GFTDEGWTMM GNDGVDDVTI 420 LVNSSPDKLM GLNLSFGNGF PSVSNAVLCA KASMLLQNVP PAILLRFLRE HRSEWADHNM 480 DAYTAAAIKV GPCSLTGSRV GNYGGQVILP LAHTIEHEEF LEVIKLDGVA HSPEEMMARE 540 LFLLQLCSGM DENAIGTCAE LIFAPIDASF ADDAPLLPSG FRIIPLESGK ESSSPNRTLD 600 LASALDIGPT GNRASSDNAG NSGCVRSVMT IAFEFAYESH MQENVACMAR QYVRSIISSV 660 QRVALALSPS NLSSHAGLRS PLGTPEAQTL AHWICNSYRC YLGVELLKSN TEGKESVLKS 720 LWHHSDAVLC CTLKAMPVFT FSNQAGLDML ETTLVALQDI SLEKIFDDNG RKTLFSEFPQ 780 IIQQGFACLQ GGICLSSMGR PVSYERAVAW KVLNDEQNAH CICFMFVNWS FV*

Sequence ? help Back to Top

Protein Sequence Length: 833 aa Download sequence Send to blast

MACKDGNKHL MDNGKYVRYT PEQVEALERL YHECPKPSSI RRQQLIRECP ILSNIEPRQI  60
KVWFQNRRCR EKQRKESFRL QGVNRKLTAM NKLLMEENDR LQKQVSHLVY ENGYFRQNTQ  120
NATKDTSCDS VVTSGQHNMT SQHPPRDASP AGLLSIAEET LAEFLSKATG TAVEWVQMPG  180
MKPGPDSIGI VAISHGCTGV AARACGLVGL EPTRVAEILK DRPLWFRDCR AVDIVNVLPT  240
ANGGTIELLY MQLYAPTTLA PARDFWLLRY TSVVEDGSLV ICERSLKNTQ NGPSMPPVPH  300
FVRADMLPSG YLIRPCEGGG SIIHIVDHMD LEPWSVPEVL RPLYESPMVL AQKTTMAALR  360
HLRQISHEVS QPNVTGWGRR PAALRALSQR LSRGFNEALN GFTDEGWTMM GNDGVDDVTI  420
LVNSSPDKLM GLNLSFGNGF PSVSNAVLCA KASMLLQNVP PAILLRFLRE HRSEWADHNM  480
DAYTAAAIKV GPCSLTGSRV GNYGGQVILP LAHTIEHEEF LEVIKLDGVA HSPEEMMARE  540
LFLLQLCSGM DENAIGTCAE LIFAPIDASF ADDAPLLPSG FRIIPLESGK ESSSPNRTLD  600
LASALDIGPT GNRASSDNAG NSGCVRSVMT IAFEFAYESH MQENVACMAR QYVRSIISSV  660
QRVALALSPS NLSSHAGLRS PLGTPEAQTL AHWICNSYRC YLGVELLKSN TEGKESVLKS  720
LWHHSDAVLC CTLKAMPVFT FSNQAGLDML ETTLVALQDI SLEKIFDDNG RKTLFSEFPQ  780
IIQQGFACLQ GGICLSSMGR PVSYERAVAW KVLNDEQNAH CICFMFVNWS FV*

Expression -- Description ? help Back to Top
Source	Description
Uniprot	TISSUE SPECIFICITY: Highly expressed the developing vascular elements and the adaxial portion of cotyledons. Expressed in developing ovules, stamens and carpels. Expressed in procambium and shoot meristem. {ECO:0000269\|PubMed:14701930, ECO:0000269\|PubMed:15705957}.

Functional Description ? help Back to Top
Source	Description
UniProt	Probable transcription factor involved in the regulation of meristem development to promote lateral organ formation. May regulates procambial and vascular tissue formation or maintenance, and vascular development in inflorescence stems. {ECO:0000269\|PubMed:15598805, ECO:0000269\|PubMed:15705957, ECO:0000269\|PubMed:16617092}.

Cis-element ? help Back to Top
Source	Link
PlantRegMap	Medtr8g013980.1

Regulation -- Description ? help Back to Top
Source	Description
UniProt	INDUCTION: By auxin. Repressed by miR165 and miR166. {ECO:0000269\|PubMed:15773855, ECO:0000269\|PubMed:16033795, ECO:0000269\|PubMed:16617092, ECO:0000269\|PubMed:17237362}.

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_003627005.1	0.0	homeobox-leucine zipper protein ATHB-15
Swissprot	Q9ZU11	0.0	ATB15_ARATH; Homeobox-leucine zipper protein ATHB-15
TrEMBL	G7LFY5	0.0	G7LFY5_MEDTR; Class III homeodomain leucine zipper protein
STRING	AET01481	0.0	(Medicago truncatula)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Fabids	OGEF1946	33	87

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G52150.1	0.0	HD-ZIP family protein

Link Out ? help Back to Top
Phytozome	Medtr8g013980.1
Entrez Gene	11428604

Publications ? help Back to Top
Young ND, et al. The Medicago genome provides insight into the evolution of rhizobial symbioses. Nature, 2011. 480(7378): p. 520-4 [PMID:22089132] Yamada T,Sasaki Y,Hashimoto K,Nakajima K,Gasser CS CORONA, PHABULOSA and PHAVOLUTA collaborate with BELL1 to confine WUSCHEL expression to the nucellus in Arabidopsis ovules. Development, 2016. 143(3): p. 422-6 [PMID:26700684]