PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Medtr8g017500.1
Common NameMTR_8g017500
Organism
Medicago truncatula
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Trifolieae; Medicago
Family MYB
Protein Properties Length: 349aa    MW: 40006.7 Da    PI: 6.4264
Description MYB family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Medtr8g017500.1genomeMtView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding56.65.7e-181461148
                     TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS
  Myb_DNA-binding  1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48
                     rg W++eEde+l+++++ +G g+W+++++  g+ R++k+c++rw +yl
  Medtr8g017500.1 14 RGLWSPEEDEKLIKYITTYGHGCWSSVPKLAGLERCGKSCRLRWINYL 61
                     788*******************************************97 PP
2Myb_DNA-binding45.12.4e-1467110146
                      TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHH CS
  Myb_DNA-binding   1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqk 46 
                      rg+++++E  l+v++++ lG++ W+ Ia+++  gRt++++k++w++
  Medtr8g017500.1  67 RGSFSQQEVALIVELHNILGNR-WAQIAKHLT-GRTDNEVKNFWNS 110
                      899*******************.********9.***********97 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:1.10.10.608.1E-27664IPR009057Homeodomain-like
PROSITE profilePS5129424.968965IPR017930Myb domain
SuperFamilySSF466892.43E-2811108IPR009057Homeodomain-like
SMARTSM007172.6E-141363IPR001005SANT/Myb domain
PfamPF002499.1E-161461IPR001005SANT/Myb domain
CDDcd001676.28E-121761No hitNo description
Gene3DG3DSA:1.10.10.601.0E-2365116IPR009057Homeodomain-like
PROSITE profilePS5129419.31966116IPR017930Myb domain
SMARTSM007171.0E-1466114IPR001005SANT/Myb domain
PfamPF002496.6E-1367110IPR001005SANT/Myb domain
CDDcd001676.56E-1069109No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 349 aa     Download sequence    Send to blast
MRHHSCCNKQ KVKRGLWSPE EDEKLIKYIT TYGHGCWSSV PKLAGLERCG KSCRLRWINY  60
LRPDLKRGSF SQQEVALIVE LHNILGNRWA QIAKHLTGRT DNEVKNFWNS TIKKKIHSHD  120
ITPSFITFSD VHTPYHNTGS MENSFPLNAN PNVTLNFNHH HHQDYLYHST SSPNQQSNFH  180
QIDTKVDIND HYNANFLHIQ NPMAQNIVQP ISNLSTYEDT WSIDSVALHL NPLNQENQFS  240
KSDTTPLNKL MNPIELMQQY DQYHDLVELD ETVPELENHQ SLEDYACSIL DSSNSQEHEA  300
PAKIQCYSTS GIIHPLDYNI DAFMCMSSLP SSISQIVTNP IIPLGWES*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1a5j_A1e-29141187110B-MYB
Search in ModeBase
Cis-element ? help Back to Top
SourceLink
PlantRegMapMedtr8g017500.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_013444369.10.0transcription factor MYB26
TrEMBLA0A072TMJ50.0A0A072TMJ5_MEDTR; Myb transcription factor
STRINGXP_004510395.11e-149(Cicer arietinum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF30143168
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G13890.26e-75myb domain protein 26
Publications ? help Back to Top
  1. Young ND, et al.
    The Medicago genome provides insight into the evolution of rhizobial symbioses.
    Nature, 2011. 480(7378): p. 520-4
    [PMID:22089132]