PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Medtr8g019540.1
Common NameMTR_8g019540
Organism
Medicago truncatula
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Trifolieae; Medicago
Family NF-YA
Protein Properties Length: 319aa    MW: 34795.5 Da    PI: 8.577
Description NF-YA family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Medtr8g019540.1genomeMtView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1CBFB_NFYA104.31.1e-32164220158
        CBFB_NFYA   1 deplYVNaKQyqrIlkRRqkRakleeekkldeksrkpylheSRhkhAlrRpRgsgGrF 58 
                      +ep+YVNaKQy++Il+RRq Rakle+++kl  k+rkpylheSRh hAl+R+RgsgGrF
  Medtr8g019540.1 164 EEPIYVNAKQYHAILRRRQYRAKLEAQNKL-VKNRKPYLHESRHLHALKRARGSGGRF 220
                      69****************************.**************************9 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM005213.1E-37162223IPR001289Nuclear transcription factor Y subunit A
PROSITE profilePS5115237.437163223IPR001289Nuclear transcription factor Y subunit A
PfamPF020451.9E-27165220IPR001289Nuclear transcription factor Y subunit A
PRINTSPR006165.7E-24166188IPR001289Nuclear transcription factor Y subunit A
PROSITE patternPS006860168188IPR018362CCAAT-binding factor, conserved site
PRINTSPR006165.7E-24197220IPR001289Nuclear transcription factor Y subunit A
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0010262Biological Processsomatic embryogenesis
GO:0016602Cellular ComponentCCAAT-binding factor complex
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 319 aa     Download sequence    Send to blast
MKHSWPWGSS ESGVQQSSMS ENLTLNMSVL QQECHKSKPL VFQFQDQDSS STQSTGQSYL  60
EVGSGQSGPI SVQYNNSSTC STLSETGGKS TEGIILSSAG SRDFTLPSSQ LDHNQSLAPV  120
AFPHVETYSN GLLAAPYGSR NNVNHAQLAG MPPVRIPLPL NLCEEPIYVN AKQYHAILRR  180
RQYRAKLEAQ NKLVKNRKPY LHESRHLHAL KRARGSGGRF LNTNKLQDHG FNVSTTTRVN  240
PSGNVPESRV HQVEKYRDGA STTTCSDVTC ASNSDDMFQQ HESDFRSCGY PSHMQDLSAD  300
ARGGGGGGGN QHRLSVLM*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
4awl_A1e-20164222260NUCLEAR TRANSCRIPTION FACTOR Y SUBUNIT ALPHA
Search in ModeBase
Expression -- UniGene ? help Back to Top
UniGene ID E-value Expressed in
Mtr.265210.0root
Cis-element ? help Back to Top
SourceLink
PlantRegMapMedtr8g019540.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankJQ9182730.0JQ918273.1 Medicago truncatula nuclear transcription factor Y subunit A8 (NF-YA8) mRNA, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_013444424.10.0nuclear transcription factor Y subunit A-6 isoform X2
TrEMBLA0A072TLS70.0A0A072TLS7_MEDTR; CCAAT-binding transcription factor
STRINGXP_004510428.11e-180(Cicer arietinum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF101202541
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G14020.13e-49nuclear factor Y, subunit A6
Publications ? help Back to Top
  1. Young ND, et al.
    The Medicago genome provides insight into the evolution of rhizobial symbioses.
    Nature, 2011. 480(7378): p. 520-4
    [PMID:22089132]