PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Medtr8g020330.5
Common NameMTR_8g020330
Organism
Medicago truncatula
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Trifolieae; Medicago
Family MYB_related
Protein Properties Length: 659aa    MW: 72950.5 Da    PI: 8.082
Description MYB_related family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Medtr8g020330.5genomeMtView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding28.14.7e-09540588348
                      SS-HHHHHHHHHHHHHTTTT-HHHHHHHHT...TTS-HHHHHHHHHHHT CS
  Myb_DNA-binding   3 rWTteEdellvdavkqlGggtWktIartmg...kgRtlkqcksrwqkyl 48 
                      +WT  E ++lvd+v + G+g+W+ I r       +Rt  ++k++w+++l
  Medtr8g020330.5 540 AWTLVEVLKLVDGVSRCGPGRWSEIKRLSFssySHRTSVDLKDKWRNLL 588
                      7**************************9999**9*************96 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5129414.46533592IPR017930Myb domain
SuperFamilySSF466892.42E-15535595IPR009057Homeodomain-like
Gene3DG3DSA:1.10.10.607.9E-12535591IPR009057Homeodomain-like
SMARTSM007171.4E-8537590IPR001005SANT/Myb domain
CDDcd116607.08E-19539589No hitNo description
PfamPF002494.6E-6540588IPR001005SANT/Myb domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0009651Biological Processresponse to salt stress
GO:0046686Biological Processresponse to cadmium ion
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 659 aa     Download sequence    Send to blast
METVVEIEDY DDGKLGDSGI DRSSHALSSP KRISNPVVYK LVRVEGDGRL VPATDDEVME  60
VEDFLEYENS EMRVVADTGQ SMECISIERS SSGKLRLECS EGTAEADLGK LNAKFQMLQK  120
VKQEEKLRLS SRSPVHSHVQ IDSQCSADKF PVRNEKVLSE TPFQEAHSIA SSLNYSLSNQ  180
SGSIDQCSRP SGGVIESGSS ASAVNSALKH DFSMTDGEIC LDKLSIKELH ELFKVTFGRE  240
TTVKDKQWLR RRIAMSLTNS CDVSATTFTV KDNKITRKCE EECSRNVNAA AVISVENMAV  300
QRDIKYNDSN AVGGCEVDNN QVASETRLEN LNIEHELEDE DQLREQRAAK RMRKPTKRYI  360
EELSENESRE QIPRSSSSNK STGHMQASPT SYAGPARNAY PETRTFTTRL DSLGGSGFQI  420
PCVTRVRRSR PRKNITSLMK FHPTGTGEAA KLGNKVVSNH GSDADSEIED KFIKPSSMHV  480
KVHQTSTSES TKEKKQYPVM IGTTDPRQEL RPKKIDSSSH ATEGNIPTAK GGMRRKHHRA  540
WTLVEVLKLV DGVSRCGPGR WSEIKRLSFS SYSHRTSVDL KDKWRNLLKA SFAPTSADEG  600
MNSRKHGSAP IPEPILVRVR ELAEINSQVP SNSSSSKFTA NGATNGARSM HGDRVGYL*
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1426432RRSRPRK
Expression -- UniGene ? help Back to Top
UniGene ID E-value Expressed in
Mtr.108150.0glandular trichome| leaf| root| seed
Cis-element ? help Back to Top
SourceLink
PlantRegMapMedtr8g020330.5
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_013444441.10.0uncharacterized protein LOC11429459 isoform X4
TrEMBLA0A072TMP60.0A0A072TMP6_MEDTR; Myb transcription factor
STRINGAET017290.0(Medicago truncatula)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G72650.11e-112TRF-like 6
Publications ? help Back to Top
  1. Young ND, et al.
    The Medicago genome provides insight into the evolution of rhizobial symbioses.
    Nature, 2011. 480(7378): p. 520-4
    [PMID:22089132]