PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Medtr8g022240.1
Common NameMTR_8g022240
Organism
Medicago truncatula
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Trifolieae; Medicago
Family C3H
Protein Properties Length: 397aa    MW: 45004 Da    PI: 10.3632
Description C3H family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Medtr8g022240.1genomeMtView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-CCCH23.69.1e-08374393626
                      -SGGGGTS--TTTTT-SS-SS CS
          zf-CCCH   6 CrffartGtCkyGdrCkFaHg 26 
                      Cr+far G C+yGd+CkF Hg
  Medtr8g022240.1 374 CRHFAR-GRCHYGDNCKFLHG 393
                      ******.*************8 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF689065.31E-61554No hitNo description
PROSITE profilePS508009.6862054IPR003034SAP domain
SMARTSM005138.0E-42054IPR003034SAP domain
PfamPF020372.2E-82153IPR003034SAP domain
Gene3DG3DSA:1.10.720.301.1E-72156IPR003034SAP domain
PROSITE profilePS5010316.051368395IPR000571Zinc finger, CCCH-type
SMARTSM003563.3E-4369394IPR000571Zinc finger, CCCH-type
SuperFamilySSF902293.14E-6369393IPR000571Zinc finger, CCCH-type
Gene3DG3DSA:4.10.1000.102.6E-7370395IPR000571Zinc finger, CCCH-type
PfamPF006426.3E-5374393IPR000571Zinc finger, CCCH-type
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 397 aa     Download sequence    Send to blast
MLLIDGSLIA FGLHFAAGLV EKLKVDECKM YLKKSGLRLT GNKDTLIQRI KEHQEIINGG  60
GENKYPPHSF VLNCKGDACT GDVVLFEQNV YEMFNIASRS GGGPPCGKRI VAGSIVKESY  120
GAAKQQHTFT IEVLWSKGEK PLPPLHPLLI KGRNLYRLKT LRQKWEDEGK RQKLLMEKHS  180
RGSVARADRE ARIQEKEMRK SMKENRISKK DSAKNQFQSH STMARSQNQP QETTTVFINP  240
KKTEFPSQHS ALSTPAIVNK PAAVTEQRVQ PTYSRTVVMG SDQLRNSGKS SFIANNYYAD  300
YHYRDNPTST AERYNAFIAE TNRRASYQRK PLTSANHFVP RSANANHFVP RSENANHMHT  360
SISNRESYQQ KQFCRHFARG RCHYGDNCKF LHGSRD*
Cis-element ? help Back to Top
SourceLink
PlantRegMapMedtr8g022240.1
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAC1520570.0AC152057.11 Medicago truncatula chromosome 8 clone mth2-25a12, complete sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_003627367.20.0zinc finger CCCH domain-containing protein 62
SwissprotQ338N26e-68C3H62_ORYSJ; Zinc finger CCCH domain-containing protein 62
TrEMBLG7L8C20.0G7L8C2_MEDTR; Zinc finger CCCH domain protein, putative
STRINGAET018430.0(Medicago truncatula)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF116522224
Publications ? help Back to Top
  1. Rice Chromosome 10 Sequencing Consortium
    In-depth view of structure, activity, and evolution of rice chromosome 10.
    Science, 2003. 300(5625): p. 1566-9
    [PMID:12791992]
  2. Young ND, et al.
    The Medicago genome provides insight into the evolution of rhizobial symbioses.
    Nature, 2011. 480(7378): p. 520-4
    [PMID:22089132]