PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Medtr8g023860.1
Common NameMTR_082s0007, MTR_8g023860
Organism
Medicago truncatula
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Trifolieae; Medicago
Family NAC
Protein Properties Length: 420aa    MW: 47510.1 Da    PI: 5.1471
Description NAC family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Medtr8g023860.1genomeMtView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1NAM144.84.7e-45121401127
              NAM   1 lppGfrFhPtdeelvveyLkkkvegkkleleevikevdiykvePwdLp.k.kvkaeekewyfFskrdkkyatgkrknratksgyWkatgkdkev 92 
                      +p+GfrF+Ptdeelv++yLkkk+ g++  +++vi+evd++++ePwdLp    vk+++ ew+f ++ d kya++kr +r+t++g+Wkatgkd+++
  Medtr8g023860.1  12 VPVGFRFRPTDEELVNHYLKKKLLGNDSIVNNVIAEVDVCNYEPWDLPaFsVVKSDDPEWFFLCPIDYKYAKSKRFKRTTNTGFWKATGKDRKI 105
                      599************************989899***************6347778888************************************ PP

              NAM  93 lsk.kgelvglkktLvfykgrapkgektdWvmheyr 127
                      +++ +++ +g+kktLv+y+gr p  +k++Wv+hey+
  Medtr8g023860.1 106 KVRgSNNIIGIKKTLVYYNGRVPG-VKSSWVIHEYH 140
                      **966677**********999886.9*********8 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF1019411.57E-489159IPR003441NAC domain
PROSITE profilePS5100550.43812159IPR003441NAC domain
PfamPF023651.5E-2413140IPR003441NAC domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0045893Biological Processpositive regulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0005886Cellular Componentplasma membrane
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 420 aa     Download sequence    Send to blast
MTTLFPPTLD HVPVGFRFRP TDEELVNHYL KKKLLGNDSI VNNVIAEVDV CNYEPWDLPA  60
FSVVKSDDPE WFFLCPIDYK YAKSKRFKRT TNTGFWKATG KDRKIKVRGS NNIIGIKKTL  120
VYYNGRVPGV KSSWVIHEYH DTTFEDDKRT FVLCRLMKKA EKKAEKEAEA DIHDEGEPSR  180
HMSSDHESQE IFEGIPDVSE TLPEINMESI FQAQEENFFP FSPQQSSISE NEQEVSIPNS  240
RLHDAYFRND NIIVQSPFKT IEEEDKFISS MIIDGDLDSG HVQSESLKMV YYGSSDTDAE  300
VVSTPCGDIL DTSTAFLEHP SSGEYCASKL LKSTHGNVHG STCFQSLKNG EIEDNNESTF  360
QDYFGGLEAS SCDSTADIPL EMINCIKISS SPSTLRKHKN QYHPRPAIFM SKRAASKRS*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
3ulx_A2e-321115914168Stress-induced transcription factor NAC1
Search in ModeBase
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00426DAPTransfer from AT4G01550Download
Motif logo
Cis-element ? help Back to Top
SourceLink
PlantRegMapMedtr8g023860.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_013444515.10.0NAC domain-containing protein 69 isoform X1
TrEMBLG7ZZ260.0G7ZZ26_MEDTR; NAC transcription factor-like protein
STRINGAES844640.0(Medicago truncatula)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF20652586
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G01550.11e-54NAC domain containing protein 69
Publications ? help Back to Top
  1. Young ND, et al.
    The Medicago genome provides insight into the evolution of rhizobial symbioses.
    Nature, 2011. 480(7378): p. 520-4
    [PMID:22089132]