PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Medtr8g023900.1
Common NameMTR_082s0012, MTR_087s0033, MTR_8g023900
Organism
Medicago truncatula
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Trifolieae; Medicago
Family NAC
Protein Properties Length: 471aa    MW: 55139.1 Da    PI: 5.7981
Description NAC family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Medtr8g023900.1genomeMtView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1NAM131.56.2e-41121401127
              NAM   1 lppGfrFhPtdeelvveyLkkkvegkkleleevikevdiykvePwdLp.k.kvkaeekewyfFskrdkkyatgkrknratksgyWkatgkdkev 92 
                      lp+GfrFhPtd+elv++yL++k+ g++  +++vi+evd++k++PwdLp +  ++++++ew+f ++r+ ky++ ++ +r t+ g+Wkatgkd++v
  Medtr8g023900.1  12 LPVGFRFHPTDQELVNYYLRNKLLGNEEFVNNVIAEVDVFKFKPWDLPaHsVIRSDDSEWFFLCPRNYKYQRCNKFKRGTEFGFWKATGKDHSV 105
                      79*************************888899***************5347788999************************************ PP

              NAM  93 lsk.kgelvglkktLvfykgrapkgektdWvmheyr 127
                      + + ++e++g+kktLv+y    + g+kt+Wv+ ey+
  Medtr8g023900.1 106 KIRgTDEVIGTKKTLVYY-LAPHPGVKTNWVIREYH 140
                      *9977788**********.5666689*********8 PP
2NAM132.62.7e-411953213127
              NAM   3 pGfrFhPtdeelvveyLkkkvegkkleleevikevdiykvePwdLp.k.kvkaeekewyfFskrdkkyatgkrknratksgyWkatgkdkevls 94 
                      +GfrF Pt eelv++yL++k+ g++  +++vi+evdi k+ePw+Lp +  +k++++ew+f ++ + kya++kr +r+t++g+Wkatg d+++  
  Medtr8g023900.1 195 VGFRFCPTGEELVNHYLRNKLLGNDAIVNNVIAEVDIRKFEPWELPaRsVIKSDDQEWFFLCPIEYKYAKSKRFKRTTNNGFWKATGMDRNIRI 288
                      7************************999899**************95257888999*************************************9 PP

              NAM  95 k.kgelvglkktLvfykgrapkgektdWvmheyr 127
                      + ++e++g+kktLv+++ ++  g+kt+W++hey+
  Medtr8g023900.1 289 RgTNEVIGIKKTLVYHE-NHVPGVKTNWIIHEYH 321
                      977788**********6.556679*********8 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF1019411.44E-453161IPR003441NAC domain
PROSITE profilePS5100547.23412161IPR003441NAC domain
PfamPF023651.2E-2213140IPR003441NAC domain
SuperFamilySSF1019413.4E-45187340IPR003441NAC domain
PROSITE profilePS5100546.279193340IPR003441NAC domain
PfamPF023652.2E-21195321IPR003441NAC domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 471 aa     Download sequence    Send to blast
MTTSFSLIHD CLPVGFRFHP TDQELVNYYL RNKLLGNEEF VNNVIAEVDV FKFKPWDLPA  60
HSVIRSDDSE WFFLCPRNYK YQRCNKFKRG TEFGFWKATG KDHSVKIRGT DEVIGTKKTL  120
VYYLAPHPGV KTNWVIREYH DVVTFDDNTQ RTFVLCRLMK KAEIKGEEEN DTMMCDEGEP  180
SRQMTPSFPP ILHYVGFRFC PTGEELVNHY LRNKLLGNDA IVNNVIAEVD IRKFEPWELP  240
ARSVIKSDDQ EWFFLCPIEY KYAKSKRFKR TTNNGFWKAT GMDRNIRIRG TNEVIGIKKT  300
LVYHENHVPG VKTNWIIHEY HDVTLEDSQR TFVLCRLMKK FEKNTEEELD TMICDEGESS  360
RHMSSYYENQ ETAQGISDVL SGTLPEINMQ SIFEEPFQAD KYFPYSTQQS SIYENEPELL  420
FSNAQFYNAY FKNENNVIQS TFATVDEENK FVNSMFVNGD FVTTESRRQS *
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
3ulx_A2e-311234015168Stress-induced transcription factor NAC1
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtTranscription activator activated by proteolytic cleavage through regulated intramembrane proteolysis (RIP). Involved in salt stress response during seed germination and seedling growth. Binds the auxin-responsive IAA30 gene promoter and may serve as a molecular link that interconnects a developmental feedback loop of auxin signaling with a salt signal transduction pathway during seed germination (PubMed:21450938). {ECO:0000269|PubMed:21450938}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapMedtr8g023900.1
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: By salt stress and abscisic acid (ABA) in roots. {ECO:0000269|PubMed:21450938}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_013444518.10.0NAC domain-containing protein 59
SwissprotQ9M1262e-47NAC69_ARATH; NAC domain-containing protein 69
TrEMBLG7ZZJ10.0G7ZZJ1_MEDTR; NAC transcription factor-like protein
STRINGAES844690.0(Medicago truncatula)
STRINGAES846290.0(Medicago truncatula)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF20652586
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G01550.11e-49NAC domain containing protein 69
Publications ? help Back to Top
  1. Young ND, et al.
    The Medicago genome provides insight into the evolution of rhizobial symbioses.
    Nature, 2011. 480(7378): p. 520-4
    [PMID:22089132]
  2. Liang M, et al.
    Subcellular Distribution of NTL Transcription Factors in Arabidopsis thaliana.
    Traffic, 2015. 16(10): p. 1062-74
    [PMID:26201836]
  3. He L, et al.
    Arabidopsis ANAC069 binds to C[A/G]CG[T/G] sequences to negatively regulate salt and osmotic stress tolerance.
    Plant Mol. Biol., 2017. 93(4-5): p. 369-387
    [PMID:27975189]