PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Medtr8g024210.1
Common NameMTR_8g024210
Organism
Medicago truncatula
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Trifolieae; Medicago
Family bHLH
Protein Properties Length: 366aa    MW: 41824.4 Da    PI: 5.5577
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Medtr8g024210.1genomeMtView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH42.98.7e-14179230155
                      CHHHHHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS
              HLH   1 rrrahnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55 
                      +r++h ++Er+RR+++N+ ++ Lr+l+P++   + ++ + a+i   A++++k+L+
  Medtr8g024210.1 179 QRMTHIAVERNRRRQMNDHLSVLRSLMPSS---YVQRGDQASIIGGAIDFVKELE 230
                      79****************************...9******************995 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
CDDcd000833.65E-10177227No hitNo description
Gene3DG3DSA:4.10.280.101.5E-13178233IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PROSITE profilePS5088815.472178229IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SuperFamilySSF474597.72E-17178246IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PfamPF000104.0E-11179230IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SMARTSM003534.5E-10184235IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 366 aa     Download sequence    Send to blast
MERLQGPINS CFFGEVNCLD QTLLDEQSLR FEEEEQFLIS SLEDNMPFLQ MLQSVDSPQF  60
FPLKEQNFQT LLRLQHMKKP WEDIAYIPRM DSQQVQGTTL EFESCVTQEM LEMQSPVKSE  120
SNKVSLSTSC IEKTSYECNQ QEETKTAQSC SKSQQGTTRE KRKRKRTRPV KNKEDVENQR  180
MTHIAVERNR RRQMNDHLSV LRSLMPSSYV QRGDQASIIG GAIDFVKELE QLLESLEAQK  240
RIKKNEDFGS SSSSSPPSYG MKLSPYEENE VKAENKSEAA DIKVTLIQTH VNLKIECKKK  300
AGQLIKVIVA LENLRLTILH LNITSFESSV LYSFNLKIEE DCKLGTANDI AEAVHQIFSY  360
INNGS*
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1179190RMTHIAVERNRR
Cis-element ? help Back to Top
SourceLink
PlantRegMapMedtr8g024210.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_013444538.10.0transcription factor bHLH67
TrEMBLA0A072TNY80.0A0A072TNY8_MEDTR; Putative transcription factor bHLH family
STRINGGLYMA07G05500.10.0(Glycine max)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF68943449
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G61950.11e-76bHLH family protein
Publications ? help Back to Top
  1. Young ND, et al.
    The Medicago genome provides insight into the evolution of rhizobial symbioses.
    Nature, 2011. 480(7378): p. 520-4
    [PMID:22089132]