PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Medtr8g026960.1
Common NameMTR_8g026960
Organism
Medicago truncatula
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Trifolieae; Medicago
Family HD-ZIP
Protein Properties Length: 242aa    MW: 28039.1 Da    PI: 4.9054
Description HD-ZIP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Medtr8g026960.1genomeMtView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Homeobox58.89.3e-193687556
                     SS--HHHHHHHHHHHHHSSS--HHHHHHHHHHCTS-HHHHHHHHHHHHHHHH CS
         Homeobox  5 ttftkeqleeLeelFeknrypsaeereeLAkklgLterqVkvWFqNrRakek 56
                      +ft+eq++ Le++Fe +  +  +++ +LA++lgL+ rqV +WFqN+Ra++k
  Medtr8g026960.1 36 KRFTDEQIKSLETMFETETRLEPRKKLQLARELGLQPRQVAIWFQNKRARWK 87
                     68*************************************************9 PP
2HD-ZIP_I/II114.56.7e-3735125393
      HD-ZIP_I/II   3 krrlskeqvklLEesFeeeekLeperKvelareLglqprqvavWFqnrRARtktkqlEkdyeaLkraydalkeenerLekeveeLreelke 93 
                       +r+++eq+k+LE++Fe+e++Lep++K +lareLglqprqva+WFqn+RAR+k+kqlE++y++L+++y++l+++ e+++ke ++L  +l++
  Medtr8g026960.1  35 TKRFTDEQIKSLETMFETETRLEPRKKLQLARELGLQPRQVAIWFQNKRARWKSKQLEREYNKLQNSYNNLASKFESMKKERQTLLIQLQK 125
                      69***********************************************************************************999886 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF466893.72E-191991IPR009057Homeodomain-like
Gene3DG3DSA:1.10.10.601.0E-182189IPR009057Homeodomain-like
PROSITE profilePS5007117.8642989IPR001356Homeobox domain
SMARTSM003897.2E-162993IPR001356Homeobox domain
PfamPF000463.4E-163687IPR001356Homeobox domain
CDDcd000866.13E-143890No hitNo description
PRINTSPR000319.8E-66069IPR000047Helix-turn-helix motif
PROSITE patternPS0002706487IPR017970Homeobox, conserved site
PRINTSPR000319.8E-66985IPR000047Helix-turn-helix motif
PfamPF021831.2E-1289130IPR003106Leucine zipper, homeobox-associated
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0009414Biological Processresponse to water deprivation
GO:0009738Biological Processabscisic acid-activated signaling pathway
GO:0045893Biological Processpositive regulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 242 aa     Download sequence    Send to blast
MEYSQYSSYS AEAGEEETYT TSSISSMRKK KNKNTKRFTD EQIKSLETMF ETETRLEPRK  60
KLQLARELGL QPRQVAIWFQ NKRARWKSKQ LEREYNKLQN SYNNLASKFE SMKKERQTLL  120
IQLQKLNDLI QKPIEQSQSS SQVKEAKSME SASENGGRNK CEAEVKPSPS MERSEHVLDV  180
LSDDDTSIKV EYFGLEDETG LMNFAEHADG SLTSPEDWSA FESNDLLGQS SCDYQWWDFW  240
S*
Expression -- UniGene ? help Back to Top
UniGene ID E-value Expressed in
Mtr.123490.0flower| leaf| root
Expression -- Description ? help Back to Top
Source Description
UniprotTISSUE SPECIFICITY: Widely expressed. {ECO:0000269|PubMed:16055682, ECO:0000269|PubMed:8771791}.
Functional Description ? help Back to Top
Source Description
UniProtProbable transcription activator that may act as growth regulators in response to water deficit. {ECO:0000269|PubMed:15604708, ECO:0000269|PubMed:8771791}.
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00320DAPTransfer from AT2G46680Download
Motif logo
Cis-element ? help Back to Top
SourceLink
PlantRegMapMedtr8g026960.1
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: By water deficit, by abscisic acid (ABA) and by salt stress. {ECO:0000269|PubMed:16055682, ECO:0000269|PubMed:8771791}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankJX5086490.0JX508649.1 Medicago sativa homeobox-leucine zipper protein mRNA, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_003627511.21e-178homeobox-leucine zipper protein ATHB-12
SwissprotP468977e-65ATHB7_ARATH; Homeobox-leucine zipper protein ATHB-7
TrEMBLG7LAS81e-177G7LAS8_MEDTR; Homeobox associated leucine zipper protein
STRINGAET019871e-178(Medicago truncatula)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF56353452
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G46680.12e-63homeobox 7
Publications ? help Back to Top
  1. Young ND, et al.
    The Medicago genome provides insight into the evolution of rhizobial symbioses.
    Nature, 2011. 480(7378): p. 520-4
    [PMID:22089132]
  2. Ding Y, et al.
    Four distinct types of dehydration stress memory genes in Arabidopsis thaliana.
    BMC Plant Biol., 2013. 13: p. 229
    [PMID:24377444]
  3. Zhou SF, et al.
    Membrane-associated transcription factor peptidase, site-2 protease, antagonizes ABA signaling in Arabidopsis.
    New Phytol., 2015. 208(1): p. 188-97
    [PMID:25919792]