PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Medtr8g027345.1
Common NameMTR_8g027345
Organism
Medicago truncatula
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Trifolieae; Medicago
Family MYB
Protein Properties Length: 301aa    MW: 34713.6 Da    PI: 7.4141
Description MYB family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Medtr8g027345.1genomeMtView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding54.52.8e-171461148
                     TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS
  Myb_DNA-binding  1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48
                     +g+WTt Ed ll ++v+ +G g+Wk+ +++ g+ R++k+c++rw +yl
  Medtr8g027345.1 14 KGPWTTKEDALLTKYVQAHGEGQWKSLPKKAGLLRCGKSCRLRWMNYL 61
                     79******************************99************97 PP
2Myb_DNA-binding54.82.2e-1767112148
                      TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS
  Myb_DNA-binding   1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48 
                      rg+ T+eEd+l+++++ +lG++ W++Ia +++ gRt++++k++w+++l
  Medtr8g027345.1  67 RGNITQEEDDLIIRLHSLLGNR-WSLIAGRLP-GRTDNEIKNYWNTHL 112
                      7999******************.*********.************996 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5129415.384961IPR017930Myb domain
SuperFamilySSF466892.2E-3011108IPR009057Homeodomain-like
SMARTSM007171.1E-121363IPR001005SANT/Myb domain
PfamPF002494.1E-151461IPR001005SANT/Myb domain
Gene3DG3DSA:1.10.10.602.3E-241568IPR009057Homeodomain-like
CDDcd001672.24E-91661No hitNo description
PROSITE profilePS5129426.6662116IPR017930Myb domain
SMARTSM007172.2E-1666114IPR001005SANT/Myb domain
PfamPF002491.2E-1567112IPR001005SANT/Myb domain
Gene3DG3DSA:1.10.10.601.5E-2669116IPR009057Homeodomain-like
CDDcd001674.39E-1271112No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 301 aa     Download sequence    Send to blast
MGRAPCCAKV GLHKGPWTTK EDALLTKYVQ AHGEGQWKSL PKKAGLLRCG KSCRLRWMNY  60
LRPDIKRGNI TQEEDDLIIR LHSLLGNRWS LIAGRLPGRT DNEIKNYWNT HLLKKMQRNQ  120
QTCDVTTDHD EQEQPKKKNN NKKKKRNNKE KKNDKKKGTN NDDKEEEEKI QVYLPKAIRI  180
KALNLPRTDS GSFTYESNSS NGSQQKEGTQ QVTNNNNNNN NVVCEVGEKG ENDGFGHDYD  240
YDLVNVERLE MECESYFDTC GDHGTLDRLY DEYLQLLNMD VCNYEFDSSF VESFFDSNNN  300
*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1h8a_C8e-271211625128MYB TRANSFORMING PROTEIN
Search in ModeBase
Expression -- UniGene ? help Back to Top
UniGene ID E-value Expressed in
Mtr.260690.0root
Cis-element ? help Back to Top
SourceLink
PlantRegMapMedtr8g027345.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_013444592.10.0myb-related protein 308
TrEMBLA0A072TMG70.0A0A072TMG7_MEDTR; Myb transcription factor
STRINGXP_004510651.11e-140(Cicer arietinum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF3134817
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G38620.11e-63myb domain protein 4
Publications ? help Back to Top
  1. Young ND, et al.
    The Medicago genome provides insight into the evolution of rhizobial symbioses.
    Nature, 2011. 480(7378): p. 520-4
    [PMID:22089132]