PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Medtr8g027465.1
Common NameMTR_8g027465
Organism
Medicago truncatula
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Trifolieae; Medicago
Family ERF
Protein Properties Length: 178aa    MW: 19409.1 Da    PI: 9.2268
Description ERF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Medtr8g027465.1genomeMtView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP254.92.1e-173787155
              AP2  1 sgykGVrwdkkrgrWvAeIrdpsengkrkrfslgkfgtaeeAakaaiaarkkleg 55
                     + ++GVr ++ +g+Wv+eIr+p++   + r++lg+f  +e+Aaka++ a+ +l+g
  Medtr8g027465.1 37 PVFHGVRKRR-WGKWVSEIREPRK---KSRIWLGSFPAPEMAAKAYDVAAYCLKG 87
                     5799***887.**********843...6************************998 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF008472.6E-113787IPR001471AP2/ERF domain
Gene3DG3DSA:3.30.730.102.4E-293896IPR001471AP2/ERF domain
SMARTSM003806.0E-3238101IPR001471AP2/ERF domain
SuperFamilySSF541714.64E-203897IPR016177DNA-binding domain
PROSITE profilePS5103221.9443895IPR001471AP2/ERF domain
CDDcd000187.52E-283996No hitNo description
PRINTSPR003675.3E-113950IPR001471AP2/ERF domain
PRINTSPR003675.3E-117797IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 178 aa     Download sequence    Send to blast
MEQQQHLNFT TKPDVAVKTL TTKNPAAQSG RGGTRHPVFH GVRKRRWGKW VSEIREPRKK  60
SRIWLGSFPA PEMAAKAYDV AAYCLKGCKA QLNFPDEVHR LPVLPPPSLC TARDIQAAAA  120
KAARMMVKAV ASPEDSSNDS GGSGGGDDFW GEIELPELVN GTWWSYSVAV VPEIELP*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5wx9_A5e-182899376Ethylene-responsive transcription factor ERF096
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtProbably acts as a transcriptional activator. Binds to the GCC-box pathogenesis-related promoter element. May be involved in the regulation of gene expression by stress factors and by components of stress signal transduction pathways (By similarity). {ECO:0000250}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapMedtr8g027465.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_013444607.11e-130ethylene-responsive transcription factor ERF023
SwissprotQ1ECI21e-50ERF23_ARATH; Ethylene-responsive transcription factor ERF023
TrEMBLA0A072TMI11e-129A0A072TMI1_MEDTR; AP2 domain class transcription factor
STRINGXP_004510664.11e-92(Cicer arietinum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF63752847
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G01250.12e-47ERF family protein
Publications ? help Back to Top
  1. Young ND, et al.
    The Medicago genome provides insight into the evolution of rhizobial symbioses.
    Nature, 2011. 480(7378): p. 520-4
    [PMID:22089132]
  2. Ding Y, et al.
    Four distinct types of dehydration stress memory genes in Arabidopsis thaliana.
    BMC Plant Biol., 2013. 13: p. 229
    [PMID:24377444]