PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Medtr8g032510.1
Common NameMTR_8g032510
Organism
Medicago truncatula
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Trifolieae; Medicago
Family WRKY
Protein Properties Length: 288aa    MW: 33250.2 Da    PI: 6.9423
Description WRKY family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Medtr8g032510.1genomeMtView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1WRKY64.22.1e-20119178258
                      --SS-EEEEEEE--TT-SS-EEEEEE-ST...T---EEEEEE-SSSTTEEEEEEES--SS CS
             WRKY   2 dDgynWrKYGqKevkgsefprsYYrCtsa...gCpvkkkversaedpkvveitYegeHnh 58 
                      dDg++WrKYG+K++++s++ r+YYrCt++   +C ++k+v r ++ p + ++tY g+H++
  Medtr8g032510.1 119 DDGHQWRKYGKKKINNSPYLRNYYRCTHKfdqRCLTTKHVHRIQQKPPLYKTTYYGHHTC 178
                      7***************************99999*************************98 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:2.20.25.807.4E-22110179IPR003657WRKY domain
PROSITE profilePS5081119.095113176IPR003657WRKY domain
SuperFamilySSF1182903.14E-20113179IPR003657WRKY domain
SMARTSM007745.2E-28118180IPR003657WRKY domain
PfamPF031062.3E-20119178IPR003657WRKY domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 288 aa     Download sequence    Send to blast
MEEYHIKAME EVMRGCEFAE QLQQLLLNNN TNNLMKTPTS IFVQHLVNNV INSFNNTIFL  60
MSKGNPSDQI QKEFSSIAPV VRSVDFKENW KKTSATRGCN KRRNITQTWE KVTQTPTDDD  120
GHQWRKYGKK KINNSPYLRN YYRCTHKFDQ RCLTTKHVHR IQQKPPLYKT TYYGHHTCGN  180
LPNPDIILDP NDTSSLLLSF NNTFPTPTKQ ECPFLSSPSS FSSTHSEEYN DEVPSSTLVN  240
TNLPCSDLTL HNSTLEYGHN DMMHGLLYDT VQFNDDFFQP FDGFVVE*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
6ir8_A6e-17119178968OsWRKY45
Search in ModeBase
Cis-element ? help Back to Top
SourceLink
PlantRegMapMedtr8g032510.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_013444938.10.0probable WRKY transcription factor 63
TrEMBLA0A072TQ590.0A0A072TQ59_MEDTR; WRKY transcription factor
STRINGXP_004510907.13e-79(Cicer arietinum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF19953486
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G66600.15e-23ABA overly sensitive mutant 3
Publications ? help Back to Top
  1. Young ND, et al.
    The Medicago genome provides insight into the evolution of rhizobial symbioses.
    Nature, 2011. 480(7378): p. 520-4
    [PMID:22089132]