PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Medtr8g035530.1
Common NameMTR_8g035530
Organism
Medicago truncatula
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Trifolieae; Medicago
Family FAR1
Protein Properties Length: 77aa    MW: 9191.3 Da    PI: 8.1887
Description FAR1 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Medtr8g035530.1genomeMtView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1FAR124.96.7e-082873147
             FAR1  1 kfYneYAkevGFsvrkskskkskrngeitkrtfvCskegkreeekkk 47
                     ++Y+ Y +  GF +rk+  +k   +g+i+  ++ C++eg+++++kk+
  Medtr8g035530.1 28 QYYDIYEEFHGFVIRKDDVNKD-SDGNIVACRLICNREGESKNKKKQ 73
                     69****************9998.8888***************99987 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF031018.2E-62873IPR004330FAR1 DNA binding domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 77 aa     Download sequence    Send to blast
MDTYKKIRKL TFDDIRGLRF DSEEKETQYY DIYEEFHGFV IRKDDVNKDS DGNIVACRLI  60
CNREGESKNK KKQSRY*
Cis-element ? help Back to Top
SourceLink
PlantRegMapMedtr8g035530.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAC1743471e-126AC174347.10 Medicago truncatula chromosome 8 clone mth2-173b11, complete sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
TrEMBLG7LCQ71e-47G7LCQ7_MEDTR; FAR1 DNA-binding domain protein
STRINGAET021242e-48(Medicago truncatula)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF9653634
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G07500.17e-09FAR1 family protein
Publications ? help Back to Top
  1. Young ND, et al.
    The Medicago genome provides insight into the evolution of rhizobial symbioses.
    Nature, 2011. 480(7378): p. 520-4
    [PMID:22089132]