PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Medtr8g036085.1

Common Name

MTR_8g036085

Organism

Medicago truncatula

Taxonomic ID

3880

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Trifolieae; Medicago

Family

LBD

Protein Properties

Length: 233aa MW: 24712 Da PI: 7.6904

Description

LBD family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Medtr8g036085.1	genome	Mt	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	DUF260	127.8	4.9e-40	23	123	1	100
DUF260 1 aCaaCkvlrrkCakdCvlapyfpaeq.pkkfanvhklFGasnvlkllkalpeeeredamsslvyeAearardPvyGavgvilklqqqleqlkae 93 +C aCk+lrrkC ++C++apyf +eq +++fa+vhk+FGasnv+kll+++p ++r da+ +++yeA+ar+rdP+ G+v++i++lqqq+++l+ae Medtr8g036085.1 23 PCGACKFLRRKCIPGCIFAPYFDSEQgASHFAAVHKVFGASNVSKLLQNVPVHKRLDAVITICYEAQARLRDPIFGCVAHIFTLQQQVMSLQAE 116 7*********************9989************************************************************** PP DUF260 94 lallkee 100 l++l+ + Medtr8g036085.1 117 LSYLQGH 123 99865 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS50891	23.395	22	124	IPR004883	Lateral organ boundaries, LOB
Pfam	PF03195	2.9E-39	23	121	IPR004883	Lateral organ boundaries, LOB

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0010089	Biological Process	xylem development
GO:0010199	Biological Process	organ boundary specification between lateral organs and the meristem

Sequence ? help Back to Top
Protein Sequence Length: 233 aa Download sequence Send to blast
MSINSGCSGS GCSGGANGGA CGPCGACKFL RRKCIPGCIF APYFDSEQGA SHFAAVHKVF 60 GASNVSKLLQ NVPVHKRLDA VITICYEAQA RLRDPIFGCV AHIFTLQQQV MSLQAELSYL 120 QGHLATYEVP QPPTPSPPQA LPMVSLANLP LAPSSAMPDT YDLSSLYEVP QTSSWVMQQR 180 TNEPRQYLGS DTSSTSNNGG DLQALARELL HRYGSIPHVA CSNAPSSHSL SK*

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
5ly0_A	2e-39	19	145	7	130	LOB family transfactor Ramosa2.1
5ly0_B	2e-39	19	145	7	130	LOB family transfactor Ramosa2.1
Search in ModeBase

Expression -- Description ? help Back to Top
Source	Description
Uniprot	TISSUE SPECIFICITY: Expressed in roots, stems, leaves and flowers (PubMed:12068116). Expressed in vascular tissues of hypocotyls, leaves, roots, developing floral organs and siliques (PubMed:19088331). {ECO:0000269\|PubMed:12068116, ECO:0000269\|PubMed:19088331}.

Functional Description ? help Back to Top
Source	Description
UniProt	Involved in the positive regulation of tracheary element (TE) differentiation. Involved in a positive feedback loop that maintains or promotes NAC030/VND7 expression that regulates TE differentiation-related genes. {ECO:0000269\|PubMed:19088331}.

Cis-element ? help Back to Top
Source	Link
PlantRegMap	Medtr8g036085.1

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_013445014.1	1e-172	LOB domain-containing protein 18
Swissprot	O81323	1e-74	LBD30_ARATH; LOB domain-containing protein 30
TrEMBL	A0A072TNF8	1e-171	A0A072TNF8_MEDTR; LOB domain protein
STRING	XP_004510942.1	1e-114	(Cicer arietinum)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Fabids	OGEF1771	34	93

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT2G45420.1	1e-70	LOB domain-containing protein 18

Link Out ? help Back to Top
Phytozome	Medtr8g036085.1
Entrez Gene	25501015

Publications ? help Back to Top
Young ND, et al. The Medicago genome provides insight into the evolution of rhizobial symbioses. Nature, 2011. 480(7378): p. 520-4 [PMID:22089132] Rast-Somssich MI, et al. The Arabidopsis JAGGED LATERAL ORGANS (JLO) gene sensitizes plants to auxin. J. Exp. Bot., 2017. 68(11): p. 2741-2755 [PMID:28472464] Liu C,Yu H,Li L SUMO modification of LBD30 by SIZ1 regulates secondary cell wall formation in Arabidopsis thaliana. PLoS Genet., 2019. 15(1): p. e1007928 [PMID:30657769]