PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Medtr8g038805.1
Common NameMTR_8g038805
Organism
Medicago truncatula
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Trifolieae; Medicago
Family FAR1
Protein Properties Length: 135aa    MW: 15210.4 Da    PI: 7.2537
Description FAR1 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Medtr8g038805.1genomeMtView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1FAR125.25.3e-08551123391
             FAR1  33 fvCskegkreeekkktekerrtraetrtgCkaklkvkkek.dgkwevtkleleHnHelap 91 
                      + C ++g +++ kk+   +++++++ ++gC  kl+   ++ ++ w+++ l+  HnHel+p
  Medtr8g038805.1  55 LLCERSGAHKSPKKR--LKHESTNSRKCGCVFKLHGYVSReTKDWKLAILNGVHNHELVP 112
                      67********99998..888889999****999986555559****************86 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF031011.4E-555112IPR004330FAR1 DNA binding domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 135 aa     Download sequence    Send to blast
MVENADDDDD PVETKSSFVG YSGELKPPTV EVSVDVKSNI DEASFMLKFH MLIPLLCERS  60
GAHKSPKKRL KHESTNSRKC GCVFKLHGYV SRETKDWKLA ILNGVHNHEL VPSLEWHILA  120
GRLRDDDKKI VHMT*
Cis-element ? help Back to Top
SourceLink
PlantRegMapMedtr8g038805.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_024642273.13e-32uncharacterized protein LOC11442646
TrEMBLA0A072TZZ23e-94A0A072TZZ2_MEDTR; FAR1 DNA-binding domain protein
STRINGSolyc00g012700.1.12e-32(Solanum lycopersicum)
Publications ? help Back to Top
  1. Young ND, et al.
    The Medicago genome provides insight into the evolution of rhizobial symbioses.
    Nature, 2011. 480(7378): p. 520-4
    [PMID:22089132]