PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Medtr8g046350.1
Common NameMTR_8g046350
Organism
Medicago truncatula
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Trifolieae; Medicago
Family M-type_MADS
Protein Properties Length: 164aa    MW: 18428.4 Da    PI: 7.4172
Description M-type_MADS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Medtr8g046350.1genomeMtView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1SRF-TF60.61.9e-191657849
                     HHHHHHHHHHHHHHHHHHHHHHHHT-EEEEEEE-TTSEEEEE CS
           SRF-TF  8 nrqvtfskRrngilKKAeELSvLCdaevaviifsstgklyey 49
                      rqvtfskRr g++KKA+EL +LC++++ +++fs+ +k y +
  Medtr8g046350.1 16 ARQVTFSKRRMGLFKKANELAILCGTKIVIVVFSPGNKPYSF 57
                     79*********************************9998877 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF554552.09E-25171IPR002100Transcription factor, MADS-box
PROSITE profilePS5006624.418161IPR002100Transcription factor, MADS-box
SMARTSM004322.2E-30160IPR002100Transcription factor, MADS-box
PRINTSPR004045.4E-17323IPR002100Transcription factor, MADS-box
PfamPF003198.2E-231257IPR002100Transcription factor, MADS-box
PRINTSPR004045.4E-172338IPR002100Transcription factor, MADS-box
PRINTSPR004045.4E-173859IPR002100Transcription factor, MADS-box
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 164 aa     Download sequence    Send to blast
MGRRKIEIAM VKKPEARQVT FSKRRMGLFK KANELAILCG TKIVIVVFSP GNKPYSFGHP  60
SVDAIASKFL QQELDLNDVL ETPSSNIEDL NQQHEKVMAD IAEAEKEDKA NEEMLKEYKS  120
ASPKEWKDSL MELKNMVKSR LCDLDISDSM MLLAKEPVVG IKN*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
6byy_A3e-15182187MEF2 CHIMERA
6byy_B3e-15182187MEF2 CHIMERA
6byy_C3e-15182187MEF2 CHIMERA
6byy_D3e-15182187MEF2 CHIMERA
Search in ModeBase
Cis-element ? help Back to Top
SourceLink
PlantRegMapMedtr8g046350.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_003628257.11e-117agamous-like MADS-box protein AGL61
TrEMBLG7L9741e-115G7L974_MEDTR; MADS-box transcription factor family protein
STRINGAET027331e-116(Medicago truncatula)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF24242979
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G34440.17e-30AGAMOUS-like 29
Publications ? help Back to Top
  1. Young ND, et al.
    The Medicago genome provides insight into the evolution of rhizobial symbioses.
    Nature, 2011. 480(7378): p. 520-4
    [PMID:22089132]