PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Medtr8g051580.1
Common NameMTR_8g051580
Organism
Medicago truncatula
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Trifolieae; Medicago
Family M-type_MADS
Protein Properties Length: 182aa    MW: 20267.1 Da    PI: 5.466
Description M-type_MADS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Medtr8g051580.1genomeMtView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1SRF-TF64.89.1e-211357549
                     SHHHHHHHHHHHHHHHHHHHHHHHHHHT-EEEEEEE-TTSEEEEE CS
           SRF-TF  5 nksnrqvtfskRrngilKKAeELSvLCdaevaviifsstgklyey 49
                     +   rqvtfskRr+g++KKA+EL +LC+ae+a+++fs+ +k y +
  Medtr8g051580.1 13 DPVIRQVTFSKRRTGLFKKANELAILCGAEIAIVVFSPGNKPYSF 57
                     5667**********************************9998877 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5006625.862161IPR002100Transcription factor, MADS-box
SMARTSM004329.4E-32160IPR002100Transcription factor, MADS-box
SuperFamilySSF554551.44E-26171IPR002100Transcription factor, MADS-box
PRINTSPR004042.8E-19323IPR002100Transcription factor, MADS-box
PfamPF003195.5E-241257IPR002100Transcription factor, MADS-box
PRINTSPR004042.8E-192338IPR002100Transcription factor, MADS-box
PRINTSPR004042.8E-193859IPR002100Transcription factor, MADS-box
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 182 aa     Download sequence    Send to blast
MGRRKIAIAR VRDPVIRQVT FSKRRTGLFK KANELAILCG AEIAIVVFSP GNKPYSFGHP  60
SVDDVASKFL EEELNLDDGI GSSSSEVSNR EDLNQQLDDV LAELKEAENE ARAHDEILEE  120
YKATELTQLE ELKDSYGKFK EMVKSRLSDL ETTESMLLLA EKPVVGTKNK VARKKGKQPM  180
L*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5f28_A5e-18171171MEF2C
5f28_B5e-18171171MEF2C
5f28_C5e-18171171MEF2C
5f28_D5e-18171171MEF2C
6byy_A4e-18171171MEF2 CHIMERA
6byy_B4e-18171171MEF2 CHIMERA
6byy_C4e-18171171MEF2 CHIMERA
6byy_D4e-18171171MEF2 CHIMERA
6bz1_A5e-18171171MEF2 CHIMERA
6bz1_B5e-18171171MEF2 CHIMERA
6bz1_C5e-18171171MEF2 CHIMERA
6bz1_D5e-18171171MEF2 CHIMERA
Search in ModeBase
Cis-element ? help Back to Top
SourceLink
PlantRegMapMedtr8g051580.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAC1516730.0AC151673.27 Medicago truncatula chromosome 8 clone mth2-2k12, complete sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_003628271.11e-129agamous-like MADS-box protein AGL29
TrEMBLG7L9881e-128G7L988_MEDTR; MADS-box transcription factor family protein
STRINGAET027471e-129(Medicago truncatula)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF24242979
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G34440.16e-34AGAMOUS-like 29
Publications ? help Back to Top
  1. Young ND, et al.
    The Medicago genome provides insight into the evolution of rhizobial symbioses.
    Nature, 2011. 480(7378): p. 520-4
    [PMID:22089132]