PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Medtr8g058593.1
Common NameMTR_7g108868, MTR_8g058593
Organism
Medicago truncatula
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Trifolieae; Medicago
Family C3H
Protein Properties Length: 186aa    MW: 20914.4 Da    PI: 6.5057
Description C3H family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Medtr8g058593.1genomeMtView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-CCCH39.31.1e-1280105126
                      --S---SGGGGTS--TTTTT-SS-SS CS
          zf-CCCH   1 yktelCrffartGtCkyGdrCkFaHg 26 
                      y   lC++f +tG+C yGd+CkF H+
  Medtr8g058593.1  80 YQPDLCKDFKETGYCGYGDSCKFLHD 105
                      6789*********************7 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF902297.06E-1077110IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010315.4579107IPR000571Zinc finger, CCCH-type
SMARTSM003566.8E-879106IPR000571Zinc finger, CCCH-type
Gene3DG3DSA:4.10.1000.109.9E-1480110IPR000571Zinc finger, CCCH-type
PfamPF006421.8E-1080105IPR000571Zinc finger, CCCH-type
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 186 aa     Download sequence    Send to blast
MFTNLKCYKY NGLFFSTAKP NEASKKLSFH FESSKEIQVQ HDSKATATLE TETSLEGTGG  60
STHGPLRPST HIRVSSRIDY QPDLCKDFKE TGYCGYGDSC KFLHDRTDYK SGWQLEKEWN  120
ETEKRRKQAA YCLKKYATYD NLLDMAIGHM TLLCLPIIDQ EVSKPGEQDA AEATTESKVE  180
ATPST*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5z56_M5e-2558121175238RING finger protein 113A
5z58_M5e-2558121175238RING finger protein 113A
6ff4_t5e-2558121175238RING finger protein 113A
6ff7_t5e-2558121175238RING finger protein 113A
Search in ModeBase
Expression -- UniGene ? help Back to Top
UniGene ID E-value Expressed in
Mtr.216060.0root
Cis-element ? help Back to Top
SourceLink
PlantRegMapMedtr8g058593.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAC1453296e-31AC145329.35 Medicago truncatula clone mth2-8i21, complete sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_024628724.11e-87zinc finger CCCH domain-containing protein 1
SwissprotQ9FNG69e-43C3H51_ARATH; Zinc finger CCCH domain-containing protein 51
TrEMBLA0A072U5J11e-137A0A072U5J1_MEDTR; Zinc finger C-x8-C-x5-C-x3-H type protein
STRINGAES821469e-97(Medicago truncatula)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G01350.11e-36C3H family protein
Publications ? help Back to Top
  1. Young ND, et al.
    The Medicago genome provides insight into the evolution of rhizobial symbioses.
    Nature, 2011. 480(7378): p. 520-4
    [PMID:22089132]