PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Medtr8g059170.1
Common NameMTR_8g059170
Organism
Medicago truncatula
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Trifolieae; Medicago
Family NAC
Protein Properties Length: 330aa    MW: 36960.5 Da    PI: 6.2576
Description NAC family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Medtr8g059170.1genomeMtView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1NAM165.91.4e-51141391128
              NAM   1 lppGfrFhPtdeelvveyLkkkvegkkleleevikevdiykvePwdLpkkvkaeekewyfFskrdkkyatgkrknratksgyWkatgkdkevls 94 
                      lppGfrF Ptdeel+v+yL++kv+g++++l  +i+e+d+yk++Pw Lp k++ +ekewyfFs+rd+ky++g+r+nr++ sgyWkatg+dk +++
  Medtr8g059170.1  14 LPPGFRFFPTDEELLVQYLCRKVAGHHFSL-PIIAEIDLYKFDPWVLPGKANFGEKEWYFFSPRDRKYPNGSRPNRVAGSGYWKATGTDKIITT 106
                      79**************************99.88***************99999*************************************9999 PP

              NAM  95 kkgelvglkktLvfykgrapkgektdWvmheyrl 128
                       +g++vg+kk Lvfy g+apkg+kt+W+mheyrl
  Medtr8g059170.1 107 -EGRKVGIKKALVFYIGKAPKGTKTNWIMHEYRL 139
                      .999****************************97 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF1019411.7E-6410165IPR003441NAC domain
PROSITE profilePS5100560.12514164IPR003441NAC domain
PfamPF023658.6E-2615139IPR003441NAC domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0009414Biological Processresponse to water deprivation
GO:0009737Biological Processresponse to abscisic acid
GO:0045893Biological Processpositive regulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 330 aa     Download sequence    Send to blast
MGVPERDPLS QLSLPPGFRF FPTDEELLVQ YLCRKVAGHH FSLPIIAEID LYKFDPWVLP  60
GKANFGEKEW YFFSPRDRKY PNGSRPNRVA GSGYWKATGT DKIITTEGRK VGIKKALVFY  120
IGKAPKGTKT NWIMHEYRLL DASRKHNLGS SKLDDWVLCR IYKKNSSSQK EIPTFSSKEC  180
CNASSPSSSS QVDEMLDSFL EIDDQSFALP RVTSLRMLQQ EEKFGFNNMG AGIFSDWVNP  240
TDIESSPEFG LGNQSDGMMN YGCNDYCVPS VPPFGNMDLS AESRNPTDEE VQSGMRTNRV  300
TDPSSLYQHN TNVFLSGLGD PFGFGYSGH*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1ut4_A1e-10511704171NO APICAL MERISTEM PROTEIN
1ut4_B1e-10511704171NO APICAL MERISTEM PROTEIN
1ut7_A1e-10511704171NO APICAL MERISTEM PROTEIN
1ut7_B1e-10511704171NO APICAL MERISTEM PROTEIN
3swm_A1e-10511707174NAC domain-containing protein 19
3swm_B1e-10511707174NAC domain-containing protein 19
3swm_C1e-10511707174NAC domain-containing protein 19
3swm_D1e-10511707174NAC domain-containing protein 19
3swp_A1e-10511707174NAC domain-containing protein 19
3swp_B1e-10511707174NAC domain-containing protein 19
3swp_C1e-10511707174NAC domain-containing protein 19
3swp_D1e-10511707174NAC domain-containing protein 19
4dul_A1e-10511704171NAC domain-containing protein 19
4dul_B1e-10511704171NAC domain-containing protein 19
Search in ModeBase
Expression -- UniGene ? help Back to Top
UniGene ID E-value Expressed in
Mtr.132160.0leaf| root
Expression -- Description ? help Back to Top
Source Description
UniprotTISSUE SPECIFICITY: Expressed in guard cells of the epidermis. {ECO:0000269|PubMed:25005917}.
Functional Description ? help Back to Top
Source Description
UniProtTranscription factor that acts downstream of MYC2 in the jasmonate-mediated response to Botrytis cinerea infection (PubMed:28733419). With MYC2 forms a transcription module that regulates wounding-responsive genes (PubMed:28733419). Involved in jasmonate- and coronatine-mediated stomatal reopening in response to Pseudomonas syringae pv tomato DC3000 infection (PubMed:25005917). Regulates the expression of threonine deaminase 2 (TD2) through promoter binding (PubMed:28733419). {ECO:0000269|PubMed:25005917, ECO:0000269|PubMed:28733419}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapMedtr8g059170.1
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: Induced by jasmonate (JA) (PubMed:25005917, PubMed:28733419, PubMed:30610166). Induced by wounding (PubMed:28733419, PubMed:25005917). Induced by infection with the fungal pathogen Botrytis cinerea (PubMed:28733419). Induced by coronatine (PubMed:25005917). {ECO:0000269|PubMed:25005917, ECO:0000269|PubMed:28733419, ECO:0000269|PubMed:30610166}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankKT5825430.0KT582543.1 Medicago truncatula NAC3 mRNA, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_013445409.10.0NAC domain-containing protein 72
SwissprotA0A3Q7HH641e-125JA2L_SOLLC; NAC domain-containing protein JA2L
TrEMBLA0A072U0Z00.0A0A072U0Z0_MEDTR; NAC transcription factor-like protein
STRINGXP_004514350.10.0(Cicer arietinum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF44293360
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G27410.21e-117NAC family protein
Publications ? help Back to Top
  1. Young ND, et al.
    The Medicago genome provides insight into the evolution of rhizobial symbioses.
    Nature, 2011. 480(7378): p. 520-4
    [PMID:22089132]
  2. Tomato Genome Consortium
    The tomato genome sequence provides insights into fleshy fruit evolution.
    Nature, 2012. 485(7400): p. 635-41
    [PMID:22660326]
  3. Du M, et al.
    MYC2 Orchestrates a Hierarchical Transcriptional Cascade That Regulates Jasmonate-Mediated Plant Immunity in Tomato.
    Plant Cell, 2017. 29(8): p. 1883-1906
    [PMID:28733419]
  4. Liu Y, et al.
    MYC2 Regulates the Termination of Jasmonate Signaling via an Autoregulatory Negative Feedback Loop.
    Plant Cell, 2019. 31(1): p. 106-127
    [PMID:30610166]