PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Medtr8g063550.3
Common NameMTR_8g063550
Organism
Medicago truncatula
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Trifolieae; Medicago
Family NAC
Protein Properties Length: 341aa    MW: 37287.9 Da    PI: 5.1614
Description NAC family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Medtr8g063550.3genomeMtView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1NAM152.32.3e-4761341129
              NAM   1 lppGfrFhPtdeelvveyLkkkvegkkleleevikevdiykvePwdLp..kkvkaeekewyfFskrdkkyatgkrknratksgyWkatgkdkev 92 
                      l pGfrF+Pt  el++++Lk+kv gkk+   +vi+e+diyk+ PwdLp  + +++++ ewyfF++ +kky +g+r nrat+ g+Wkatgkd++v
  Medtr8g063550.3   6 LVPGFRFSPTGVELIKYFLKRKVMGKKFLN-DVIAELDIYKYAPWDLPdlSYLQNGDLEWYFFCPIEKKYGNGSRMNRATEIGFWKATGKDRAV 98 
                      579************************877.99**************96447778888************************************ PP

              NAM  93 lskkgelvglkktLvfykgrapkgektdWvmheyrle 129
                       + ++++vg+ ktL+f++g+ap+g +tdWvmheyrle
  Medtr8g063550.3  99 QQ-NNQTVGMIKTLIFHTGKAPRGDRTDWVMHEYRLE 134
                      99.999*****************************85 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF1019418.63E-573156IPR003441NAC domain
PROSITE profilePS5100553.5716156IPR003441NAC domain
PfamPF023652.2E-238133IPR003441NAC domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 341 aa     Download sequence    Send to blast
MAIPKLVPGF RFSPTGVELI KYFLKRKVMG KKFLNDVIAE LDIYKYAPWD LPDLSYLQNG  60
DLEWYFFCPI EKKYGNGSRM NRATEIGFWK ATGKDRAVQQ NNQTVGMIKT LIFHTGKAPR  120
GDRTDWVMHE YRLEDKDLAD KGIVQDSYVI CKVFQKEGPG PRNGAQYGRP FNEEDWSDDE  180
VGTPFAEPAA LAPTLPVTSN SFVLNDQNLH AIGYNGSISM PCQSGLVPSP DPANSCQTGL  240
PPSPDPANSS QIGLTPSPDP VNSCQTGFMS SPDPSNACHI GFMSSPDPSN SCQTGYMPYP  300
DSANECQIGF MSPDPANSHQ TGLVLSPPDP VNSHLTGKHC *
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1ut4_A2e-43615717166NO APICAL MERISTEM PROTEIN
1ut4_B2e-43615717166NO APICAL MERISTEM PROTEIN
1ut7_A2e-43615717166NO APICAL MERISTEM PROTEIN
1ut7_B2e-43615717166NO APICAL MERISTEM PROTEIN
3swm_A3e-43615720169NAC domain-containing protein 19
3swm_B3e-43615720169NAC domain-containing protein 19
3swm_C3e-43615720169NAC domain-containing protein 19
3swm_D3e-43615720169NAC domain-containing protein 19
3swp_A3e-43615720169NAC domain-containing protein 19
3swp_B3e-43615720169NAC domain-containing protein 19
3swp_C3e-43615720169NAC domain-containing protein 19
3swp_D3e-43615720169NAC domain-containing protein 19
3ulx_A2e-43615715169Stress-induced transcription factor NAC1
4dul_A2e-43615717166NAC domain-containing protein 19
4dul_B2e-43615717166NAC domain-containing protein 19
Search in ModeBase
Expression -- UniGene ? help Back to Top
UniGene ID E-value Expressed in
Mtr.241120.0leaf| root
Expression -- Description ? help Back to Top
Source Description
UniprotTISSUE SPECIFICITY: Expressed in the epidermal cells of the root apical region. {ECO:0000269|PubMed:20388856}.
Functional Description ? help Back to Top
Source Description
UniProtTranscriptional regulator that binds specific DNA sequences on the promoter regions of target genes. {ECO:0000250|UniProtKB:Q9C8W9}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapMedtr8g063550.3
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAF2541240.0AF254124.1 Medicago truncatula NAC1 (NAC1) mRNA, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_012572255.21e-148NAC domain-containing protein 82-like
SwissprotQ9FY821e-88NAC82_ARATH; NAC domain-containing protein 82
TrEMBLA0A072TRC70.0A0A072TRC7_MEDTR; Plant NAC domain protein
STRINGAET031690.0(Medicago truncatula)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G09330.45e-91NAC domain containing protein 82
Publications ? help Back to Top
  1. Duarte JM, et al.
    Expression pattern shifts following duplication indicative of subfunctionalization and neofunctionalization in regulatory genes of Arabidopsis.
    Mol. Biol. Evol., 2006. 23(2): p. 469-78
    [PMID:16280546]
  2. Deeken R, et al.
    Identification of Arabidopsis thaliana phloem RNAs provides a search criterion for phloem-based transcripts hidden in complex datasets of microarray experiments.
    Plant J., 2008. 55(5): p. 746-59
    [PMID:18485061]
  3. Young ND, et al.
    The Medicago genome provides insight into the evolution of rhizobial symbioses.
    Nature, 2011. 480(7378): p. 520-4
    [PMID:22089132]
  4. Ohbayashi I, et al.
    Evidence for a Role of ANAC082 as a Ribosomal Stress Response Mediator Leading to Growth Defects and Developmental Alterations in Arabidopsis.
    Plant Cell, 2017. 29(10): p. 2644-2660
    [PMID:28899981]