PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Medtr8g065740.1
Common NameMTR_8g065740
Organism
Medicago truncatula
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Trifolieae; Medicago
Family bHLH
Protein Properties Length: 468aa    MW: 50616.5 Da    PI: 5.2149
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Medtr8g065740.1genomeMtView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH27.55.8e-09314362355
                      HHHHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS
              HLH   3 rahnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55 
                       +h+ +Er RR++i +++  L++l+P +    +k   Ka +L + ++Y++sLq
  Medtr8g065740.1 314 NSHSLAERVRREKISERMKFLQDLVPGC----NKVTGKAVMLDEIINYVQSLQ 362
                      58*************************9....677*****************9 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
CDDcd000832.71E-11309366No hitNo description
SuperFamilySSF474592.36E-17309380IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PROSITE profilePS5088815.478311361IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene3DG3DSA:4.10.280.103.5E-17312378IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PfamPF000104.7E-6314362IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SMARTSM003533.7E-10317367IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 468 aa     Download sequence    Send to blast
MSESENFEVD RKEGTLDWRF VSGNLANSSV GLVSMENSMM GTSSCPNSMV DSYGPNFLDL  60
LTNSENLGGF CDVNGQSNEV RKDGFGFARV GCDDRTVGMG WDLGSSSMIK RDGVLPNGAE  120
IFPQSLSQFS TDSGFVDAAR MSCFSAGSFV DMMNSCGIPQ SMALPLHVSR SVEHLGSDGS  180
PIQNDRRSDC PVMSQDEGKQ VLGRSCNEAD GDESSGDDGS QMLDCASGEP SIKGLNPKKR  240
KRNGQDGDSD KATGTLELPS ETAKDNCESR KKGKQQTSST AKASGKNAKQ GSQASDPPNE  300
GYVHVRARRG QATNSHSLAE RVRREKISER MKFLQDLVPG CNKVTGKAVM LDEIINYVQS  360
LQQQVEFLSM KLATVNPHVD FNMERLLPKD ILQHQPGPSS ALGFLREMPM AFPPLSHSYQ  420
PGLIHSTLPN MANLSDMLRQ TVQPQLEPLA GGFKEPNQVN PLQATKD*
Expression -- UniGene ? help Back to Top
UniGene ID E-value Expressed in
Mtr.178070.0pod| stem
Cis-element ? help Back to Top
SourceLink
PlantRegMapMedtr8g065740.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_003628711.10.0transcription factor bHLH49
TrEMBLG7LG730.0G7LG73_MEDTR; Putative transcription factor bHLH family
STRINGAET031870.0(Medicago truncatula)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF72493248
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G68920.22e-93bHLH family protein
Publications ? help Back to Top
  1. Young ND, et al.
    The Medicago genome provides insight into the evolution of rhizobial symbioses.
    Nature, 2011. 480(7378): p. 520-4
    [PMID:22089132]