PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Medtr8g066260.1
Common NameMTR_8g066260
Organism
Medicago truncatula
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Trifolieae; Medicago
Family MIKC_MADS
Protein Properties Length: 241aa    MW: 28132.2 Da    PI: 9.0301
Description MIKC_MADS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Medtr8g066260.1genomeMtView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1SRF-TF97.84.4e-31959151
                     S---SHHHHHHHHHHHHHHHHHHHHHHHHHHT-EEEEEEE-TTSEEEEEE- CS
           SRF-TF  1 krienksnrqvtfskRrngilKKAeELSvLCdaevaviifsstgklyeyss 51
                     krienk+nrqvtfskRr+g+lKKA+E+SvLCdaeva+i+fs++gkl+ey++
  Medtr8g066260.1  9 KRIENKINRQVTFSKRRAGLLKKAHEISVLCDAEVALIVFSHKGKLFEYAT 59
                     79***********************************************86 PP
2K-box106.53.2e-35751741100
            K-box   1 yqkssgksleeakaeslqqelakLkkeienLqreqRhllGedLesLslkeLqqLeqqLekslkkiRskKnellleqieelqkkekelqeenkaL 94 
                      y++++ ++++++ + +++ e+++Lk++i+ Lqr+ Rh++GedL+s+slkeLq+LeqqL+++lk iR+++n++++e+i+elqkkek +qe+n++L
  Medtr8g066260.1  75 YAERQLVANDSESQGNWTIEYTRLKAKIDLLQRNYRHYMGEDLGSMSLKELQSLEQQLDTALKLIRTRRNQVMYESISELQKKEKVIQEQNNML 168
                      566777888889999******************************************************************************* PP

            K-box  95 rkklee 100
                       kk++e
  Medtr8g066260.1 169 AKKIKE 174
                      ***987 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5006632.394161IPR002100Transcription factor, MADS-box
SMARTSM004327.7E-41160IPR002100Transcription factor, MADS-box
CDDcd002658.40E-44279No hitNo description
SuperFamilySSF554551.96E-34292IPR002100Transcription factor, MADS-box
PROSITE patternPS003500357IPR002100Transcription factor, MADS-box
PRINTSPR004043.6E-31323IPR002100Transcription factor, MADS-box
PfamPF003197.4E-261057IPR002100Transcription factor, MADS-box
PRINTSPR004043.6E-312338IPR002100Transcription factor, MADS-box
PRINTSPR004043.6E-313859IPR002100Transcription factor, MADS-box
PfamPF014862.9E-2984172IPR002487Transcription factor, K-box
PROSITE profilePS5129716.60188178IPR002487Transcription factor, K-box
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0009933Biological Processmeristem structural organization
GO:0010076Biological Processmaintenance of floral meristem identity
GO:0010582Biological Processfloral meristem determinacy
GO:0045893Biological Processpositive regulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0046982Molecular Functionprotein heterodimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 241 aa     Download sequence    Send to blast
MGRGRVQLKR IENKINRQVT FSKRRAGLLK KAHEISVLCD AEVALIVFSH KGKLFEYATD  60
SCMEKILERY ERYSYAERQL VANDSESQGN WTIEYTRLKA KIDLLQRNYR HYMGEDLGSM  120
SLKELQSLEQ QLDTALKLIR TRRNQVMYES ISELQKKEKV IQEQNNMLAK KIKEKEKIAA  180
QQQAQWEHPN HHGVNPNYLL QQQLPTLNMG GNYREEAPEM GRNELDLTLE PLYTCHLGCF  240
*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
6byy_A3e-22174173MEF2 CHIMERA
6byy_B3e-22174173MEF2 CHIMERA
6byy_C3e-22174173MEF2 CHIMERA
6byy_D3e-22174173MEF2 CHIMERA
6bz1_A3e-22174173MEF2 CHIMERA
6bz1_B3e-22174173MEF2 CHIMERA
6bz1_C3e-22174173MEF2 CHIMERA
6bz1_D3e-22174173MEF2 CHIMERA
Search in ModeBase
Expression -- Description ? help Back to Top
Source Description
UniprotTISSUE SPECIFICITY: Expressed in tendrils and flowers. {ECO:0000269|PubMed:15247405}.
Functional Description ? help Back to Top
Source Description
UniProtProbable transcription factor involved in flower development. {ECO:0000250|UniProtKB:Q0HA25}.
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00096ChIP-seqTransfer from AT1G69120Download
Motif logo
Cis-element ? help Back to Top
SourceLink
PlantRegMapMedtr8g066260.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankDQ1393450.0DQ139345.1 Medicago truncatula MADS box protein PIM mRNA, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_003628742.11e-179truncated transcription factor CAULIFLOWER A
SwissprotQ6E6S71e-134AP1_VITVI; Agamous-like MADS-box protein AP1
TrEMBLG7LGW91e-178G7LGW9_MEDTR; MADS-box transcription factor
STRINGAET032181e-179(Medicago truncatula)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF58832119
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G69120.11e-106MIKC_MADS family protein
Publications ? help Back to Top
  1. Jaillon O, et al.
    The grapevine genome sequence suggests ancestral hexaploidization in major angiosperm phyla.
    Nature, 2007. 449(7161): p. 463-7
    [PMID:17721507]
  2. Díaz-Riquelme J,Lijavetzky D,Martínez-Zapater JM,Carmona MJ
    Genome-wide analysis of MIKCC-type MADS box genes in grapevine.
    Plant Physiol., 2009. 149(1): p. 354-69
    [PMID:18997115]
  3. Young ND, et al.
    The Medicago genome provides insight into the evolution of rhizobial symbioses.
    Nature, 2011. 480(7378): p. 520-4
    [PMID:22089132]
  4. Grimplet J,Martínez-Zapater JM,Carmona MJ
    Structural and functional annotation of the MADS-box transcription factor family in grapevine.
    BMC Genomics, 2016. 17: p. 80
    [PMID:26818751]