PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Medtr8g066770.1
Common NameMTR_8g066770
Organism
Medicago truncatula
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Trifolieae; Medicago
Family bHLH
Protein Properties Length: 313aa    MW: 35574.2 Da    PI: 6.8528
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Medtr8g066770.1genomeMtView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH41.62.2e-13112163155
                      CHHHHHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS
              HLH   1 rrrahnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55 
                      +r +h  +Er+RR+++N+ ++ Lr+l+P++   + ++ + a+i+  A+e++k+L+
  Medtr8g066770.1 112 QRITHITVERNRRKQMNEHLAVLRSLMPES---YVQRGDQASIVGGAIEFVKELE 163
                      699***************************...9******************995 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF474594.32E-16110179IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
CDDcd000832.82E-12110167No hitNo description
PROSITE profilePS5088814.589111162IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PfamPF000101.3E-10112163IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene3DG3DSA:4.10.280.105.3E-13113177IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SMARTSM003531.2E-9117168IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 313 aa     Download sequence    Send to blast
MALETLSSSC NEFSNSNFII YDTISATSFS SNLIDTTNES SFLENTMNYD HEQAHHEADA  60
AIFDQSNCSM MNSRKRQSME QEETMNNPQV VQRKKRRRKP RVCKNKEEAE TQRITHITVE  120
RNRRKQMNEH LAVLRSLMPE SYVQRGDQAS IVGGAIEFVK ELEHLLQSLE ARKLQLVQQE  180
VTQNNEDMAI SKPPFAQFFV YPQYTWSQTP NKYTSKTKAA IADIEVTLIE THANLRILTR  240
TRPGQLTKLV AGFQRLFLSI LHLNVTTIQP LVFYSISAKV EEGFQLGSVD GIATAVHHLL  300
GRIEEEASLT CC*
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
17395RKRQSMEQEETMNNPQVVQRKKR
29197QRKKRRR
39298RKKRRRK
49299RKKRRRKP
59398KKRRRK
Expression -- UniGene ? help Back to Top
UniGene ID E-value Expressed in
Mtr.226990.0seed
Expression -- Description ? help Back to Top
Source Description
UniprotTISSUE SPECIFICITY: Expressed constitutively in roots, leaves, stems, and flowers. {ECO:0000269|PubMed:12679534}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapMedtr8g066770.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankBT0527480.0BT052748.1 Medicago truncatula clone MTYFH_FI_FJ_FK1G-A-3 unknown mRNA.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_003628791.20.0transcription factor bHLH94
SwissprotQ9C7T46e-70BH096_ARATH; Transcription factor bHLH96
TrEMBLA0A396GLS40.0A0A396GLS4_MEDTR; Putative transcription factor bHLH family
STRINGAET032670.0(Medicago truncatula)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF106443138
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G72210.12e-72bHLH family protein
Publications ? help Back to Top
  1. Skinner MK,Rawls A,Wilson-Rawls J,Roalson EH
    Basic helix-loop-helix transcription factor gene family phylogenetics and nomenclature.
    Differentiation, 2010. 80(1): p. 1-8
    [PMID:20219281]
  2. Young ND, et al.
    The Medicago genome provides insight into the evolution of rhizobial symbioses.
    Nature, 2011. 480(7378): p. 520-4
    [PMID:22089132]
  3. Ezer D, et al.
    The G-Box Transcriptional Regulatory Code in Arabidopsis.
    Plant Physiol., 2017. 175(2): p. 628-640
    [PMID:28864470]