PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Medtr8g067650.1
Common NameMTR_8g067650
Organism
Medicago truncatula
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Trifolieae; Medicago
Family WRKY
Protein Properties Length: 521aa    MW: 58391.4 Da    PI: 5.6117
Description WRKY family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Medtr8g067650.1genomeMtView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1WRKY83.71.8e-26339398260
                      --SS-EEEEEEE--TT-SS-EEEEEE-ST.T---EEEEEE-SSSTTEEEEEEES--SS-- CS
             WRKY   2 dDgynWrKYGqKevkgsefprsYYrCtsa.gCpvkkkversaedpkvveitYegeHnhek 60 
                      +D ++WrKYGqK++kgs++prsY++C+s  +C +kk ve+ ++ +++ e+tY geHnh+k
  Medtr8g067650.1 339 EDSWRWRKYGQKHIKGSPHPRSYFKCSSFnDCLAKKLVEKINTGEDTYEVTYIGEHNHKK 398
                      7*************************9877****************************85 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:2.20.25.807.5E-27327399IPR003657WRKY domain
PROSITE profilePS5081125.935333399IPR003657WRKY domain
SuperFamilySSF1182907.59E-24335399IPR003657WRKY domain
SMARTSM007741.2E-31338398IPR003657WRKY domain
PfamPF031061.4E-22339397IPR003657WRKY domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 521 aa     Download sequence    Send to blast
MENDDWDLFS IVRSCKATNF CETATPTLPI STNTITNNII SPHNTMSYCF DDFTLTQENS  60
TIPISPLKPN DYIELDKLII RSNVTKIIPI PTTSDIPTPS ITTTTSPTSS TNNTIITTPS  120
TITIPNHITT DTITNTSSHG SDQNSTFFYF PTLIEQQQMQ PSEFTELEKW ILQFNPTTTI  180
PISTITTPNP TSSTPITFTT PTTTINTPIT ITTIIPTTTT TTTMTNYEAN GINQYSTVSN  240
FPMLVEQQQV QANQNRVSVF DSISCIKTTT TNFHPELNHP LVPEEPQRNH NQLPILLPQT  300
SSTVLLSTNP KHKKFKSGKR KNNNQVILVS YVKADRISED SWRWRKYGQK HIKGSPHPRS  360
YFKCSSFNDC LAKKLVEKIN TGEDTYEVTY IGEHNHKKPA NNRNSIVGTS CWNISSNSGL  420
DVVREVGCCS NVRNLQGFPG ESNMPYLKNE VIKNAGKLDS SDMIMVPFDE LERENSNIFL  480
DESKLIESSN EDDILIPNMT NMLDDFFLNV NNINNGSPFR *
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1wj2_A9e-143394001878Probable WRKY transcription factor 4
2lex_A9e-143394001878Probable WRKY transcription factor 4
Search in ModeBase
Cis-element ? help Back to Top
SourceLink
PlantRegMapMedtr8g067650.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
TrEMBLG7LIF90.0G7LIF9_MEDTR; WRKY DNA-binding domain protein
STRINGAET033250.0(Medicago truncatula)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF2058325
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G01250.12e-25WRKY family protein
Publications ? help Back to Top
  1. Young ND, et al.
    The Medicago genome provides insight into the evolution of rhizobial symbioses.
    Nature, 2011. 480(7378): p. 520-4
    [PMID:22089132]