PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Medtr8g069080.1
Common NameMTR_8g069080
Organism
Medicago truncatula
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Trifolieae; Medicago
Family ZF-HD
Protein Properties Length: 269aa    MW: 30435.1 Da    PI: 7.0188
Description ZF-HD family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Medtr8g069080.1genomeMtView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1ZF-HD_dimer90.12.1e-2867119457
      ZF-HD_dimer   4 vrYkeClkNhAaslGghavDGCgEfmpsegeegtaaalkCaACgCHRnFHRrev 57 
                       ++keC+kNhA s+Gg+a+DGCgEf+p+ g egt++ +kCaAC+CHRnFHRre+
  Medtr8g069080.1  67 EKFKECRKNHASSIGGYALDGCGEFLPA-GIEGTIEFFKCAACNCHRNFHRREN 119
                      589************************9.999********************96 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
ProDomPD1257742.0E-1857118IPR006456ZF-HD homeobox protein, Cys/His-rich dimerisation domain
PfamPF047701.2E-2568119IPR006456ZF-HD homeobox protein, Cys/His-rich dimerisation domain
TIGRFAMsTIGR015662.3E-2668118IPR006456ZF-HD homeobox protein, Cys/His-rich dimerisation domain
PROSITE profilePS5152324.85369118IPR006456ZF-HD homeobox protein, Cys/His-rich dimerisation domain
SuperFamilySSF466891.31E-16191264IPR009057Homeodomain-like
Gene3DG3DSA:1.10.10.601.1E-24196267IPR009057Homeodomain-like
TIGRFAMsTIGR015651.3E-22206261IPR006455Homeodomain, ZF-HD class
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 269 aa     Download sequence    Send to blast
MFTSIPLFVI LSSLCLFISK PMENKENEEE VVMANITEPT SYVETTKTLN HHDEETLMNS  60
QSNSFEEKFK ECRKNHASSI GGYALDGCGE FLPAGIEGTI EFFKCAACNC HRNFHRRENG  120
VVNEENISLP FNNPRFPQPT PFSTVFQTPT GYHHVTGTSR GTTTSLPSSV VHDEAHFPRG  180
DLGEGFVEPI YHGDTYSGGE GSSKSKRFRS KFTHYQKERM LGFAMKSGWK INKQDENLVE  240
QFCNEIGVKC KTFRVWMYNN KHTHGNKH*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1wh7_A4e-172052631775ZF-HD homeobox family protein
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtPutative transcription factor. {ECO:0000250}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapMedtr8g069080.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAC1421430.0AC142143.29 Medicago truncatula chromosome 8 clone mth2-25c22, complete sequence.
GenBankAC1833050.0AC183305.20 Medicago truncatula chromosome 8 clone mth2-176c9, complete sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_003628916.30.0zinc-finger homeodomain protein 2
SwissprotA2Z2596e-48ZHD1_ORYSI; Zinc-finger homeodomain protein 1
TrEMBLG7LJ960.0G7LJ96_MEDTR; Homeobox domain, ZF-HD class protein
STRINGAET033921e-177(Medicago truncatula)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF20634253
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G24660.13e-40homeobox protein 22
Publications ? help Back to Top
  1. Young ND, et al.
    The Medicago genome provides insight into the evolution of rhizobial symbioses.
    Nature, 2011. 480(7378): p. 520-4
    [PMID:22089132]