PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Medtr8g069160.1
Common NameMTR_8g069160
Organism
Medicago truncatula
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Trifolieae; Medicago
Family NAC
Protein Properties Length: 260aa    MW: 29439.4 Da    PI: 6.7899
Description NAC family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Medtr8g069160.1genomeMtView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1NAM105.19.2e-33682081128
              NAM   1 lppGfrFhPtdeelvveyLkkkvegkk......lelee.vikev.diykvePwdLpkkvkaeekewyfFskrdkkyatgkrknratk......s 80 
                      lp+G++F+P+d+e++ ++L++kv  +       ++++  +++   +i++++P++Lp  vk++ +  +fF++ +k+y+tg+rk+r+++      +
  Medtr8g069160.1  68 LPAGVKFDPNDQEIL-QHLEAKVLFDVpklhplIDEFIpTLEGEnGICYTHPEKLP-GVKKDGQIRHFFHRPSKAYTTGTRKRRKVQtdeegsE 159
                      799***********9.99****998885564332222222333336**********.667777788******************7444565557 PP

              NAM  81 gyWkatgkdkevlskkgelvglkktLvfy..kgrapkgektdWvmheyrl 128
                       +W++tgk+++v+  +g  +g kk+Lv+y   gr++k+ekt+Wvmh+y+l
  Medtr8g069160.1 160 TRWHKTGKTRPVII-DGVMKGFKKILVLYtnYGRQKKPEKTNWVMHQYHL 208
                      78************.99************6658***************98 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF1019413.14E-3564223IPR003441NAC domain
PROSITE profilePS5100530.72368227IPR003441NAC domain
PfamPF023651.3E-1469208IPR003441NAC domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 260 aa     Download sequence    Send to blast
MTWCNDSDDQ DRGIELITST VIPGTSNESP LVTDDETKPT EVRTLTCPSC GHNIEFQDQG  60
GINELPGLPA GVKFDPNDQE ILQHLEAKVL FDVPKLHPLI DEFIPTLEGE NGICYTHPEK  120
LPGVKKDGQI RHFFHRPSKA YTTGTRKRRK VQTDEEGSET RWHKTGKTRP VIIDGVMKGF  180
KKILVLYTNY GRQKKPEKTN WVMHQYHLGS NEEEKDGELV VSKKILEYLS SSERRLACNS  240
VIRFMYSSVN FFLSLMASS*
Expression -- UniGene ? help Back to Top
UniGene ID E-value Expressed in
Mtr.150720.0root
Expression -- Description ? help Back to Top
Source Description
UniprotTISSUE SPECIFICITY: Expressed in protoxylem and elongating interfascicular fiber cells of elongating internodes, developing metaxylem cells and interfascicular fibers of non-elongating internodes and developing secondary xylem of roots. {ECO:0000269|PubMed:18952777}.
Functional Description ? help Back to Top
Source Description
UniProtTranscriptional activator that plays a regulatory role in the development of secondary cell wall fibers (PubMed:18952777,PubMed:22133261). Involved in the regulation of cellulose and hemicellulose biosynthetic genes as well as of genes involved in lignin polymerization and signaling (PubMed:22133261). Is not a direct target of SND1 (PubMed:18952777). {ECO:0000269|PubMed:18952777, ECO:0000269|PubMed:22133261}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapMedtr8g069160.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAC1421430.0AC142143.29 Medicago truncatula chromosome 8 clone mth2-25c22, complete sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_003628924.10.0NAC domain-containing protein 73
SwissprotO494591e-108NAC73_ARATH; NAC domain-containing protein 73
TrEMBLG7LJA40.0G7LJA4_MEDTR; NAC transcription factor-like protein
STRINGAET034000.0(Medicago truncatula)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF122834108
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G28500.11e-111NAC domain containing protein 73
Publications ? help Back to Top
  1. Srinivasasainagendra V,Page GP,Mehta T,Coulibaly I,Loraine AE
    CressExpress: a tool for large-scale mining of expression data from Arabidopsis.
    Plant Physiol., 2008. 147(3): p. 1004-16
    [PMID:18467456]
  2. Young ND, et al.
    The Medicago genome provides insight into the evolution of rhizobial symbioses.
    Nature, 2011. 480(7378): p. 520-4
    [PMID:22089132]
  3. Sakamoto S,Mitsuda N
    Reconstitution of a secondary cell wall in a secondary cell wall-deficient Arabidopsis mutant.
    Plant Cell Physiol., 2015. 56(2): p. 299-310
    [PMID:25535195]
  4. Jervis J, et al.
    A metabolomic assessment of NAC154 transcription factor overexpression in field grown poplar stem wood.
    Phytochemistry, 2015. 115: p. 112-20
    [PMID:25771508]