PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Medtr8g069740.1
Common NameMTR_8g069740
Organism
Medicago truncatula
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Trifolieae; Medicago
Family bHLH
Protein Properties Length: 270aa    MW: 29941 Da    PI: 5.7835
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Medtr8g069740.1genomeMtView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH28.13.7e-09113158555
                      HHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS
              HLH   5 hnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55 
                      h + Er+RR+ +  ++ eL   +P +     kK +K+ ++++A++Y+k+L+
  Medtr8g069740.1 113 HIMSERNRRQLLTRKIIELSAFIPGL-----KKIDKVHVVTEAINYVKQLE 158
                      8899**********************.....9*****************96 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5088812.703108157IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SuperFamilySSF474594.45E-12111168IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
CDDcd000832.37E-8113162No hitNo description
PfamPF000101.1E-6113158IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene3DG3DSA:4.10.280.103.2E-11113169IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SMARTSM003534.9E-8114163IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 270 aa     Download sequence    Send to blast
MEECLCHTNN TFDEEFLRDI LYQTPQDQFS VPIATTGLFN NSSTNVSHST QHAEEKQANS  60
LPMPTTSILS LDKSVTLLPP TEQHHDSLPL SSSMASQGSN SKKPRSASET LDHIMSERNR  120
RQLLTRKIIE LSAFIPGLKK IDKVHVVTEA INYVKQLEER VKGLGEDIKK KDTGSVSTIT  180
RSHILIDKDT AIDEMKTEEC YGRNESLVEV EARVLGNEVL IKIHCGMQEG IVVNIMSQLQ  240
LLHLSVTTTN VLPFGNTLDI AIIAQASNY*
Expression -- UniGene ? help Back to Top
UniGene ID E-value Expressed in
Mtr.188080.0seed
Cis-element ? help Back to Top
SourceLink
PlantRegMapMedtr8g069740.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_013446167.20.0transcription factor bHLH18
TrEMBLA0A072TRP60.0A0A072TRP6_MEDTR; Helix loop helix DNA-binding domain protein
STRINGAES682351e-137(Medicago truncatula)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF15398711
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G22750.11e-35bHLH family protein
Publications ? help Back to Top
  1. Young ND, et al.
    The Medicago genome provides insight into the evolution of rhizobial symbioses.
    Nature, 2011. 480(7378): p. 520-4
    [PMID:22089132]