PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Medtr8g069935.1
Common NameMTR_8g069935
Organism
Medicago truncatula
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Trifolieae; Medicago
Family WRKY
Protein Properties Length: 464aa    MW: 52058.5 Da    PI: 6.4249
Description WRKY family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Medtr8g069935.1genomeMtView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1WRKY77.41.6e-24331390260
                      --SS-EEEEEEE--TT-SS-EEEEEE-ST.T---EEEEEE-SSSTTEEEEEEES--SS-- CS
             WRKY   2 dDgynWrKYGqKevkgsefprsYYrCtsa.gCpvkkkversaedpkvveitYegeHnhek 60 
                      +D ++W+KYG K++kgs++prsYY+C s  +C++kk ve+s++ +++ ++tY+geHnh+k
  Medtr8g069935.1 331 EDSWAWKKYGEKPIKGSPHPRSYYKCKSFwDCSAKKLVEKSKTSENTYVVTYKGEHNHKK 390
                      7*************************8888****************************85 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:2.20.25.804.5E-25321391IPR003657WRKY domain
SuperFamilySSF1182901.57E-22324391IPR003657WRKY domain
PROSITE profilePS5081126.693325391IPR003657WRKY domain
SMARTSM007748.7E-26330390IPR003657WRKY domain
PfamPF031067.1E-21331389IPR003657WRKY domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 464 aa     Download sequence    Send to blast
MDNDNCDLFS IVRSCKATTF ATPTTNFETL PPTLTTTTNN IISPQNTTPC FDYFSFFEDN  60
SSAPITPLKP NDFIELEKLI ININPTTTIP TPTITSIPTI TTTPTTTPTP SSTNIPSHIT  120
TNTITNTSFH DSNQNSTFSN FPKLIEQQQL ELNEFTELEK MILKFYPNTT IPTSTITAPT  180
PTTTIFTTPT TIIPTTTFAT LTTSTPIIPT ITTTMTTTSV CKTNQYLTIS DYQILIEQQR  240
NEPNRNNEVS VSEPHTRTEI ATSNFDCAFN HPSIPQQSLR KRNQLPFLLP RTNSRFLPNT  300
HPKKPKFKSR KREKNNLVTY VCHVREDEPS EDSWAWKKYG EKPIKGSPHP RSYYKCKSFW  360
DCSAKKLVEK SKTSENTYVV TYKGEHNHKK PGVNQNSVST GVKPEVSTEV KPEVSTGESE  420
VPYTSMEFIG SSDDDVILIP NMTPMLEDLL MDFNQINSGA LFP*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1wj2_A3e-133313921878Probable WRKY transcription factor 4
2lex_A3e-133313921878Probable WRKY transcription factor 4
Search in ModeBase
Cis-element ? help Back to Top
SourceLink
PlantRegMapMedtr8g069935.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
TrEMBLA0A072TTN40.0A0A072TTN4_MEDTR; WRKY DNA-binding domain protein
STRINGAET033251e-114(Medicago truncatula)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF2058325
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G52830.12e-23WRKY DNA-binding protein 27
Publications ? help Back to Top
  1. Young ND, et al.
    The Medicago genome provides insight into the evolution of rhizobial symbioses.
    Nature, 2011. 480(7378): p. 520-4
    [PMID:22089132]