PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Medtr8g077950.2
Common NameMTR_8g077950
Organism
Medicago truncatula
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Trifolieae; Medicago
Family bZIP
Protein Properties Length: 339aa    MW: 36134.6 Da    PI: 5.7208
Description bZIP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Medtr8g077950.2genomeMtView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1bZIP_177.12.2e-24256318163
                      XXXXCHHHCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH CS
           bZIP_1   1 ekelkrerrkqkNReAArrsRqRKkaeieeLeekvkeLeaeNkaLkkeleelkkevaklksev 63 
                      ++elkr++rkq+NRe+ArrsR+RK+ae+eeL+++v++L +eN++L++el++l++e++kl+se+
  Medtr8g077950.2 256 DRELKRQKRKQSNRESARRSRLRKQAECEELQKRVEALGGENRTLREELQKLSEECEKLTSEN 318
                      689**********************************************************98 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF077772.1E-30196IPR012900G-box binding protein, multifunctional mosaic region
PfamPF165961.0E-6116227No hitNo description
Gene3DG3DSA:1.20.5.1706.5E-19253315No hitNo description
SMARTSM003381.9E-21256320IPR004827Basic-leucine zipper domain
PfamPF001705.2E-22257318IPR004827Basic-leucine zipper domain
PROSITE profilePS5021713.3258321IPR004827Basic-leucine zipper domain
SuperFamilySSF579599.14E-12259315No hitNo description
CDDcd147023.07E-24261311No hitNo description
PROSITE patternPS000360263278IPR004827Basic-leucine zipper domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0010310Biological Processregulation of hydrogen peroxide metabolic process
GO:0010629Biological Processnegative regulation of gene expression
GO:0090342Biological Processregulation of cell aging
GO:0005634Cellular Componentnucleus
GO:0005737Cellular Componentcytoplasm
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
GO:0044212Molecular Functiontranscription regulatory region DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 339 aa     Download sequence    Send to blast
MGTKEDSTTK PSKTSSSTQE VPTPTVQPSY PDWSTSMQAY YNPGAAPPPY YASTVASPTP  60
HPYMWGGQHP MMAPYGTPVP YPAMFPPGNI YAHPSMTPSA MHQTTEFEGK GPDGKDKDSS  120
KKPKGTSANT SAKAGEGGKA GSGSGNDGFS HSGDSGSEGS SNASDENQQE SARNKKGSFD  180
LMLVDGANAQ NNTTGPISQS SVPGNPVVSI PATNLNIGMD LWNASSAGAE AAKMRHNQPG  240
APGAGALGEQ WMQQDDRELK RQKRKQSNRE SARRSRLRKQ AECEELQKRV EALGGENRTL  300
REELQKLSEE CEKLTSENDS IKEDLERLCG PEVVANLE*
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1272278RRSRLRK
2272279RRSRLRKQ
Expression -- UniGene ? help Back to Top
UniGene ID E-value Expressed in
Mtr.95130.0leaf| root
Expression -- Description ? help Back to Top
Source Description
UniprotTISSUE SPECIFICITY: Found in both light and dark grown leaves.
Functional Description ? help Back to Top
Source Description
UniProtBinds to the G-box motif (5'-CCACGTGG-3') of the rbcS-1A gene promoter (PubMed:1373374). G-box and G-box-like motifs are cis-acting elements defined in promoters of certain plant genes which are regulated by such diverse stimuli as light-induction or hormone control. Binds to the G-box motif 5'-CACGTG-3' of LHCB2.4 (At3g27690) promoter. May act as transcriptional activator in light-regulated expression of LHCB2.4. Probably binds DNA as monomer. DNA-binding activity is redox-dependent (PubMed:22718771). {ECO:0000269|PubMed:1373374, ECO:0000269|PubMed:22718771}.
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00039PBMTransfer from AT4G36730Download
Motif logo
Cis-element ? help Back to Top
SourceLink
PlantRegMapMedtr8g077950.2
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankBT0520820.0BT052082.1 Medicago truncatula clone MTYF9_FA_FB_FC1G-M-2 unknown mRNA.
GenBankBT1378080.0BT137808.1 Medicago truncatula clone JCVI-FLMt-12A19 unknown mRNA.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_003629480.10.0G-box-binding factor 1 isoform X1
RefseqXP_024629610.10.0G-box-binding factor 1 isoform X1
SwissprotP427741e-103GBF1_ARATH; G-box-binding factor 1
TrEMBLG7LEV30.0G7LEV3_MEDTR; BZIP transcription factor family protein
STRINGAET039560.0(Medicago truncatula)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G36730.13e-57G-box binding factor 1
Publications ? help Back to Top
  1. Young ND, et al.
    The Medicago genome provides insight into the evolution of rhizobial symbioses.
    Nature, 2011. 480(7378): p. 520-4
    [PMID:22089132]
  2. Gangappa SN,Srivastava AK,Maurya JP,Ram H,Chattopadhyay S
    Z-box binding transcription factors (ZBFs): a new class of transcription factors in Arabidopsis seedling development.
    Mol Plant, 2013. 6(6): p. 1758-68
    [PMID:24157607]
  3. Ding Y, et al.
    Four distinct types of dehydration stress memory genes in Arabidopsis thaliana.
    BMC Plant Biol., 2013. 13: p. 229
    [PMID:24377444]
  4. Karumuri S,Bandopadhyay R
    In silico analysis of the structure and interaction of COP1 protein of Arabidopsis thaliana.
    Indian J. Biochem. Biophys., 2014. 51(5): p. 343-9
    [PMID:25630103]
  5. Smykowski A,Zimmermann P,Zentgraf U
    CORRECTION. G-Box Binding Factor1 Reduces CATALASE2 Expression and Regulates the Onset of Leaf Senescence in Arabidopsis.
    Plant Physiol., 2016. 170(2): p. 1164-7
    [PMID:26826725]
  6. Smykowski A,Fischer SM,Zentgraf U
    Phosphorylation Affects DNA-Binding of the Senescence-Regulating bZIP Transcription Factor GBF1.
    Plants (Basel), 2015. 4(3): p. 691-709
    [PMID:27135347]
  7. Giri MK, et al.
    GBF1 differentially regulates CAT2 and PAD4 transcription to promote pathogen defense in Arabidopsis thaliana.
    Plant J., 2017. 91(5): p. 802-815
    [PMID:28622438]