PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Medtr8g078700.1
Common NameMTR_8g078700
Organism
Medicago truncatula
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Trifolieae; Medicago
Family C2H2
Protein Properties Length: 491aa    MW: 55643.5 Da    PI: 6.8763
Description C2H2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Medtr8g078700.1genomeMtView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-C2H212.30.00052266289123
                      EEETTTTEEESSHHHHHHHHHH.T CS
          zf-C2H2   1 ykCpdCgksFsrksnLkrHirt.H 23 
                      y C  C  sF +k +L++H ++ H
  Medtr8g078700.1 266 YACAFCFDSFANKKLLESHVQKrH 289
                      89******************9988 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM003556.2232255IPR015880Zinc finger, C2H2-like
PROSITE profilePS501578.683232260IPR007087Zinc finger, C2H2
PROSITE patternPS000280234255IPR007087Zinc finger, C2H2
PROSITE profilePS501578.6266294IPR007087Zinc finger, C2H2
SMARTSM003550.26266289IPR015880Zinc finger, C2H2-like
PROSITE patternPS000280268289IPR007087Zinc finger, C2H2
SMARTSM003556.2300323IPR015880Zinc finger, C2H2-like
PROSITE profilePS501578.85300328IPR007087Zinc finger, C2H2
PROSITE patternPS000280302323IPR007087Zinc finger, C2H2
SMARTSM003552.6371394IPR015880Zinc finger, C2H2-like
PROSITE patternPS000280373394IPR007087Zinc finger, C2H2
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0032259Biological Processmethylation
GO:0008168Molecular Functionmethyltransferase activity
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 491 aa     Download sequence    Send to blast
MEILYTGCSE TNQGAAYGPN EEHICVENCE YDISNLDGEL SDSSFVMEGL HMDSFSLLAA  60
TKGQQCQAYI KDKGRQCVRT TIGNNRYCCV HFLSKKERRV KSITPICGGT TAADTRCKNH  120
SLPRLSFCKK HLHKAEMGQT SNSISRTLKR KAEVHCSGSQ SLICKDLVFV HLESPLEINP  180
ESVINDDDDD SFFAKNIFGE TLKLSGNDQW TGSPSYGNDH NEDFCIDNEN AVKCKVCFEE  240
FSDNQTLGNH WMESHEKEAQ WLFRGYACAF CFDSFANKKL LESHVQKRHY AQFGEHCLLF  300
LCIPCGCHFG NMEELWLHVK SVHPVEFELL SKTPEQLMLS TGDDSPKMME QGNEASLGND  360
NSENRSGSRK FSCRFCDLKF DLLPDLGRHH QAAHMERNLA NRRLANSGVR YYAHRLKSGR  420
LTRPNPKFER GLEEASNRTR RRAEANFKKR NQANKLLEMG EISIQPPHAD ELEKSQCSEA  480
ANTLFRCSEK *
Cis-element ? help Back to Top
SourceLink
PlantRegMapMedtr8g078700.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_013446424.10.0histone-lysine N-methyltransferase SUVR5
RefseqXP_024629401.10.0histone-lysine N-methyltransferase SUVR5
RefseqXP_024629402.10.0histone-lysine N-methyltransferase SUVR5
RefseqXP_024629403.10.0histone-lysine N-methyltransferase SUVR5
TrEMBLA0A072TTG40.0A0A072TTG4_MEDTR; Histone-lysine N-methyltransferase SUVR5-like protein
STRINGAES843980.0(Medicago truncatula)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF2800222
Publications ? help Back to Top
  1. Young ND, et al.
    The Medicago genome provides insight into the evolution of rhizobial symbioses.
    Nature, 2011. 480(7378): p. 520-4
    [PMID:22089132]