PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Medtr8g079060.1

Common Name

MTR_8g079060

Organism

Medicago truncatula

Taxonomic ID

3880

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Trifolieae; Medicago

Family

Dof

Protein Properties

Length: 230aa MW: 24221.8 Da PI: 8.4872

Description

Dof family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Medtr8g079060.1	genome	Mt	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	zf-Dof	122.1	1.9e-38	25	85	2	62
zf-Dof 2 kekalkcprCdstntkfCyynnyslsqPryfCkaCrryWtkGGalrnvPvGggrrknkkss 62 ++++l+cprCdstntkfCyynny+ sqPr+fCkaCrryWt+GG+lr++PvGgg+rkn k+s Medtr8g079060.1 25 EQENLPCPRCDSTNTKFCYYNNYNYSQPRHFCKACRRYWTHGGTLRDIPVGGGTRKNAKRS 85 57899****************************************************9876 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
ProDom	PD007478	2.0E-31	22	83	IPR003851	Zinc finger, Dof-type
Pfam	PF02701	6.0E-33	27	83	IPR003851	Zinc finger, Dof-type
PROSITE profile	PS50884	29.152	29	83	IPR003851	Zinc finger, Dof-type
PROSITE pattern	PS01361	0	31	67	IPR003851	Zinc finger, Dof-type

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0009733	Biological Process	response to auxin
GO:0009751	Biological Process	response to salicylic acid
GO:0042545	Biological Process	cell wall modification
GO:0045787	Biological Process	positive regulation of cell cycle
GO:0044212	Molecular Function	transcription regulatory region DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 230 aa Download sequence Send to blast
MTSSDSGESR RSTKPQIRPG APAPEQENLP CPRCDSTNTK FCYYNNYNYS QPRHFCKACR 60 RYWTHGGTLR DIPVGGGTRK NAKRSRTNHV AVTSSSAVTS AAPEHHHYQT ISAVQGGSFP 120 FSGGVDGDGK QNMSVCGSFT SLLNNNNNNN QSSGFLALGG FGLGLEEMGF GIGRTGWAFP 180 GMMDGVPVVS SGVVGNTWQL EGGEGGFVGA GDCFSWPGLA ISTPVNGLK*

Expression -- UniGene ? help Back to Top
UniGene ID	E-value	Expressed in
Mtr.5122	0.0	flower\| root

Expression -- Description ? help Back to Top
Source	Description
Uniprot	TISSUE SPECIFICITY: Constitutively expressed in the whole plant. {ECO:0000269\|PubMed:10758484, ECO:0000269\|PubMed:8718629}.

Functional Description ? help Back to Top
Source	Description
UniProt	Transcription factor that binds specifically to a 5'-AA[AG]G-3' consensus core sequence. Enhances the DNA binding of OBF transcription factors to OCS elements.

Binding Motif ? help Back to Top
Motif ID	Method	Source	Motif file
MP00402	DAP	Transfer from AT3G50410	Download

Cis-element ? help Back to Top
Source	Link
PlantRegMap	Medtr8g079060.1

Regulation -- Description ? help Back to Top
Source	Description
UniProt	INDUCTION: By auxin and salicylic acid (SA). {ECO:0000269\|PubMed:10758484}.

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	Retrieve

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	BT134264	0.0	BT134264.1 Medicago truncatula clone JCVI-FLMt-3F20 unknown mRNA.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_013446454.1	1e-170	dof zinc finger protein DOF3.4
Swissprot	Q39088	4e-56	DOF34_ARATH; Dof zinc finger protein DOF3.4
TrEMBL	A0A072TTI5	1e-168	A0A072TTI5_MEDTR; Dof domain zinc finger protein
STRING	XP_004509185.1	1e-111	(Cicer arietinum)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Fabids	OGEF2801	31	68

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT3G50410.1	8e-46	OBF binding protein 1

Link Out ? help Back to Top
Phytozome	Medtr8g079060.1
Entrez Gene	25501671

Publications ? help Back to Top
Duarte JM, et al. Expression pattern shifts following duplication indicative of subfunctionalization and neofunctionalization in regulatory genes of Arabidopsis. Mol. Biol. Evol., 2006. 23(2): p. 469-78 [PMID:16280546] Young ND, et al. The Medicago genome provides insight into the evolution of rhizobial symbioses. Nature, 2011. 480(7378): p. 520-4 [PMID:22089132]