PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Medtr8g079502.1
Common NameMTR_8g079502
Organism
Medicago truncatula
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Trifolieae; Medicago
Family M-type_MADS
Protein Properties Length: 182aa    MW: 20569.5 Da    PI: 9.6551
Description M-type_MADS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Medtr8g079502.1genomeMtView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1SRF-TF67.71.1e-211253445
                     -SHHHHHHHHHHHHHHHHHHHHHHHHHHT-EEEEEEE-TTSE CS
           SRF-TF  4 enksnrqvtfskRrngilKKAeELSvLCdaevaviifsstgk 45
                     ++   rqvtfskRr+g++KKA+ELS+LC+aeva+++fs+  +
  Medtr8g079502.1 12 KDPNTRQVTFSKRRTGLFKKANELSILCGAEVAIVVFSPGSR 53
                     67778*********************************9765 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5006626.773161IPR002100Transcription factor, MADS-box
SMARTSM004323.1E-33160IPR002100Transcription factor, MADS-box
SuperFamilySSF554556.54E-27172IPR002100Transcription factor, MADS-box
CDDcd001202.17E-31260No hitNo description
PRINTSPR004044.1E-20323IPR002100Transcription factor, MADS-box
PfamPF003198.1E-251157IPR002100Transcription factor, MADS-box
PRINTSPR004044.1E-202338IPR002100Transcription factor, MADS-box
PRINTSPR004044.1E-203859IPR002100Transcription factor, MADS-box
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 182 aa     Download sequence    Send to blast
MGRRKIEIEM VKDPNTRQVT FSKRRTGLFK KANELSILCG AEVAIVVFSP GSRPYSFGHP  60
GVDVVAAKYL QQETEPSDSQ ENPSSGAPDI EKLNLELGEV LAQIREGEKQ VETHDEIMNQ  120
NDVTKLSNLK ELRDSYKELQ DWIKLRLSDI EISGYMMLLA QDPVVGIKAK SAKRKRRRRR  180
N*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1tqe_P3e-19183182Myocyte-specific enhancer factor 2B
1tqe_Q3e-19183182Myocyte-specific enhancer factor 2B
1tqe_R3e-19183182Myocyte-specific enhancer factor 2B
1tqe_S3e-19183182Myocyte-specific enhancer factor 2B
6c9l_A3e-19183182Myocyte-specific enhancer factor 2B
6c9l_B3e-19183182Myocyte-specific enhancer factor 2B
6c9l_C3e-19183182Myocyte-specific enhancer factor 2B
6c9l_D3e-19183182Myocyte-specific enhancer factor 2B
6c9l_E3e-19183182Myocyte-specific enhancer factor 2B
6c9l_F3e-19183182Myocyte-specific enhancer factor 2B
Search in ModeBase
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1173177RKRRR
2173179RKRRRRR
3174179KRRRRR
Cis-element ? help Back to Top
SourceLink
PlantRegMapMedtr8g079502.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_024628462.11e-132agamous-like MADS-box protein AGL29
TrEMBLA0A072U3W41e-130A0A072U3W4_MEDTR; MADS-box transcription factor family protein
STRINGXP_004504539.16e-98(Cicer arietinum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF24242979
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G34440.15e-39AGAMOUS-like 29
Publications ? help Back to Top
  1. Young ND, et al.
    The Medicago genome provides insight into the evolution of rhizobial symbioses.
    Nature, 2011. 480(7378): p. 520-4
    [PMID:22089132]