PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Medtr8g079940.1
Common NameMTR_8g079940
Organism
Medicago truncatula
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Trifolieae; Medicago
Family ARR-B
Protein Properties Length: 539aa    MW: 61344.8 Da    PI: 6.6774
Description ARR-B family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Medtr8g079940.1genomeMtView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1G2-like79.73.5e-25209262155
          G2-like   1 kprlrWtpeLHerFveaveqLGGsekAtPktilelmkvkgLtlehvkSHLQkYRl 55 
                      k+r++W+ +LH++Fv+av+qL G +k  Pk+il+lm+v+ Lt+e+v+SHLQkYRl
  Medtr8g079940.1 209 KARVVWSVDLHQKFVKAVNQL-GFDKVGPKKILDLMNVPWLTRENVASHLQKYRL 262
                      68*******************.9*******************************8 PP
2Response_reg73.21e-24311391109
                      EEEESSSHHHHHHHHHHHHHTTCEEEEEESSHHHHHHHHHHHH..ESEEEEESSCTTSEHHHHHHHHHHHTTTSEEEEEESTTTHHHHHHHHHT CS
     Response_reg   1 vlivdDeplvrellrqalekegyeevaeaddgeealellkekd..pDlillDiempgmdGlellkeireeepklpiivvtahgeeedalealka 92 
                      vl+vdD+ + +++l+++l+k  y +v+++  + eal++l+e++  +D+++ D++mp+mdG++ll++   e  +lp+i+++  ge + + + ++ 
  Medtr8g079940.1  31 VLVVDDDLTCLRILEKMLKKCFY-RVTTCCLAIEALKKLRESKgtYDIVISDVNMPDMDGFKLLEHVGLEM-DLPVIMMSVDGETSRVMKGVQH 122
                      89*********************.***************999999**********************6644.8********************* PP

                      TESEEEESS--HHHHHH CS
     Response_reg  93 GakdflsKpfdpeelvk 109
                      Ga d+l Kp+ ++e+++
  Medtr8g079940.1 123 GACDYLLKPIRMKEVRN 139
                      **********9999876 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PIRSFPIRSF0363923.5E-1387513IPR017053Response regulator B-type, plant
SuperFamilySSF521723.98E-3428156IPR011006CheY-like superfamily
Gene3DG3DSA:3.40.50.23003.4E-4128152No hitNo description
SMARTSM004488.6E-3029141IPR001789Signal transduction response regulator, receiver domain
PROSITE profilePS5011042.07130145IPR001789Signal transduction response regulator, receiver domain
PfamPF000728.0E-2231139IPR001789Signal transduction response regulator, receiver domain
CDDcd001565.54E-2732145No hitNo description
SuperFamilySSF466891.31E-17207266IPR009057Homeodomain-like
Gene3DG3DSA:1.10.10.605.5E-28208267IPR009057Homeodomain-like
TIGRFAMsTIGR015575.6E-22209262IPR006447Myb domain, plants
PfamPF002493.1E-8211261IPR001005SANT/Myb domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0000160Biological Processphosphorelay signal transduction system
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0009735Biological Processresponse to cytokinin
GO:0010082Biological Processregulation of root meristem growth
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 539 aa     Download sequence    Send to blast
MVHNRSLVYD NMDNACFPSP HLDAFPAGLR VLVVDDDLTC LRILEKMLKK CFYRVTTCCL  60
AIEALKKLRE SKGTYDIVIS DVNMPDMDGF KLLEHVGLEM DLPVIMMSVD GETSRVMKGV  120
QHGACDYLLK PIRMKEVRNI WQHVLRKRIR EAREFESLEG IHLMRNGSDH TDDGNLFAVG  180
KEMNLMKKRK DFDSKHDDQV FLDQTFIKKA RVVWSVDLHQ KFVKAVNQLG FDKVGPKKIL  240
DLMNVPWLTR ENVASHLQKY RLYLSRLQKK NDQKSSSGGI KHSDLPSKDP GCLSFLNSFN  300
KQQKEGAIDS FGYSDGTLKI QMDTTSHEKR RASTSDIPNP KIRKSSEIGL NQSLESAESE  360
ANHTVFDSVI PTQYSWNEVP KRPLGEELNT LVQLKDNLSH LPLNVTQQHF QNDRSLSINS  420
NPSGYKSDYI RPVNSTVSSV DTFPSQSKSD IIFTSNLSLK TPKFNLGCAS DMEIYQRNLL  480
LGIESASTPL DEDLNLFLLQ GEYYDMNFDM QNIEMSEYYD PRLIPEVPTN LYASGDYS*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1irz_A3e-17208267463ARR10-B
Search in ModeBase
Expression -- Description ? help Back to Top
Source Description
UniprotTISSUE SPECIFICITY: Detected in the whole plant. Predominantly expressed in roots and stems. {ECO:0000269|PubMed:15173562}.
Functional Description ? help Back to Top
Source Description
UniProtTranscriptional activator that binds specifically to the DNA sequence 5'-[AG]GATT-3'. Functions as a response regulator involved in His-to-Asp phosphorelay signal transduction system. Phosphorylation of the Asp residue in the receiver domain activates the ability of the protein to promote the transcription of target genes. Could directly activate some type-A response regulators in response to cytokinins (By similarity). {ECO:0000250, ECO:0000269|PubMed:12610214}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapMedtr8g079940.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_013446511.10.0two-component response regulator ARR11
SwissprotQ9FXD61e-123ARR11_ARATH; Two-component response regulator ARR11
TrEMBLA0A072TUL70.0A0A072TUL7_MEDTR; Two-component response regulator
STRINGGLYMA05G27670.20.0(Glycine max)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF39993360
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G67710.11e-125response regulator 11
Publications ? help Back to Top
  1. Young ND, et al.
    The Medicago genome provides insight into the evolution of rhizobial symbioses.
    Nature, 2011. 480(7378): p. 520-4
    [PMID:22089132]
  2. Zwack PJ, et al.
    Cytokinin Response Factor 6 Represses Cytokinin-Associated Genes during Oxidative Stress.
    Plant Physiol., 2016. 172(2): p. 1249-1258
    [PMID:27550996]
  3. Meng WJ, et al.
    Type-B ARABIDOPSIS RESPONSE REGULATORs Specify the Shoot Stem Cell Niche by Dual Regulation of WUSCHEL.
    Plant Cell, 2017. 29(6): p. 1357-1372
    [PMID:28576846]