PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Medtr8g086020.1
Common NameMTR_8g086020
Organism
Medicago truncatula
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Trifolieae; Medicago
Family bZIP
Protein Properties Length: 161aa    MW: 18290.3 Da    PI: 6.5115
Description bZIP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Medtr8g086020.1genomeMtView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1bZIP_148.22.3e-153493463
                     XCHHHCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH CS
           bZIP_1  4 lkrerrkqkNReAArrsRqRKkaeieeLeekvkeLeaeNkaLkkeleelkkevaklksev 63
                      k+ +r+q+NRe+ArrsR +K++ +e L + +++L++eN +   ++   ++++ +++se+
  Medtr8g086020.1 34 QKKRKRMQSNRESARRSRMKKQQHMEDLSNQIEQLKKENIQISTNVGVTTQMYLNVESEN 93
                     6999*****************************************999999999999987 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM003388.9E-173195IPR004827Basic-leucine zipper domain
Gene3DG3DSA:1.20.5.1706.7E-123177No hitNo description
PROSITE profilePS5021710.6913379IPR004827Basic-leucine zipper domain
SuperFamilySSF579594.44E-123587No hitNo description
PfamPF001701.9E-113592IPR004827Basic-leucine zipper domain
CDDcd147025.82E-213686No hitNo description
PROSITE patternPS0003603853IPR004827Basic-leucine zipper domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0080149Biological Processsucrose induced translational repression
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
GO:0046982Molecular Functionprotein heterodimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 161 aa     Download sequence    Send to blast
MASSGGTYSS GTSSLQNSGS EGDHNHVQVN ITDQKKRKRM QSNRESARRS RMKKQQHMED  60
LSNQIEQLKK ENIQISTNVG VTTQMYLNVE SENAILRVQM AELSHRLQSL NDIIHYIESS  120
NSLFQETDQL FNDCGFSDTW NTFPVNQQPI MASSDHMLMY *
Expression -- UniGene ? help Back to Top
UniGene ID E-value Expressed in
Mtr.58190.0leaf| root| seed| stem
Expression -- Description ? help Back to Top
Source Description
UniprotTISSUE SPECIFICITY: Expressed in the micropylar endosperm and radicle tip in early germinating seeds. {ECO:0000269|PubMed:23461773}.
Functional Description ? help Back to Top
Source Description
UniProtTranscription factor that binds to the DNA G-box motif 5'-CACGTG-3' of MAN7 promoter. Involved in the positive regulation of seed germination through MAN7 gene activation. MAN7 is required for both, loosening of the micropylar endosperm, and rupture of the seed coat in germinating seeds. {ECO:0000269|PubMed:23461773}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapMedtr8g086020.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAC1520530.0AC152053.34 Medicago truncatula clone mth2-35e5, complete sequence.
GenBankAC1712670.0AC171267.17 Medicago truncatula clone mth2-17i7, complete sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_003629740.21e-116bZIP transcription factor 44
SwissprotC0Z2L52e-44BZP44_ARATH; bZIP transcription factor 44
TrEMBLG7LIP11e-115G7LIP1_MEDTR; BZIP transcription factor bZIP124
STRINGAET042161e-115(Medicago truncatula)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF61334147
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G75390.15e-42basic leucine-zipper 44
Publications ? help Back to Top
  1. Young ND, et al.
    The Medicago genome provides insight into the evolution of rhizobial symbioses.
    Nature, 2011. 480(7378): p. 520-4
    [PMID:22089132]
  2. Ezer D, et al.
    The G-Box Transcriptional Regulatory Code in Arabidopsis.
    Plant Physiol., 2017. 175(2): p. 628-640
    [PMID:28864470]
  3. Pedrotti L, et al.
    Snf1-RELATED KINASE1-Controlled C/S1-bZIP Signaling Activates Alternative Mitochondrial Metabolic Pathways to Ensure Plant Survival in Extended Darkness.
    Plant Cell, 2018. 30(2): p. 495-509
    [PMID:29348240]