PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Medtr8g086290.1
Common NameMTR_8g086290
Organism
Medicago truncatula
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Trifolieae; Medicago
Family M-type_MADS
Protein Properties Length: 178aa    MW: 20629.5 Da    PI: 6.2871
Description M-type_MADS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Medtr8g086290.1genomeMtView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1SRF-TF72.92.7e-232067249
                     ---SHHHHHHHHHHHHHHHHHHHHHHHHHHT-EEEEEEE-TTSEEEEE CS
           SRF-TF  2 rienksnrqvtfskRrngilKKAeELSvLCdaevaviifsstgklyey 49
                     + e ++n+qvtfskRr+g++ KA+EL++LCd+ +a+i+fs+ gkl+ +
  Medtr8g086290.1 20 KLEKETNKQVTFSKRRQGLFRKASELCTLCDVHAAIIVFSPAGKLHCF 67
                     56899****************************************987 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM004329.0E-321170IPR002100Transcription factor, MADS-box
PROSITE profilePS5006625.9181171IPR002100Transcription factor, MADS-box
SuperFamilySSF554551.01E-271282IPR002100Transcription factor, MADS-box
CDDcd002655.49E-321283No hitNo description
PRINTSPR004048.3E-211333IPR002100Transcription factor, MADS-box
PfamPF003192.1E-232167IPR002100Transcription factor, MADS-box
PRINTSPR004048.3E-213348IPR002100Transcription factor, MADS-box
PRINTSPR004048.3E-214869IPR002100Transcription factor, MADS-box
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 178 aa     Download sequence    Send to blast
MNMDNLRKKN TGRRKIEIKK LEKETNKQVT FSKRRQGLFR KASELCTLCD VHAAIIVFSP  60
AGKLHCFGEP NTDQILNSYI NGTIEFDVSN STGNSSTYKE YNKQYEEALK VLEMEKQKLA  120
DVENLTKIWN MGNWWNESID EMNSDQLEEF MESISELKRK LLEKADEHAN TMMFSML*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
3mu6_A1e-141279168Myocyte-specific enhancer factor 2A
3mu6_B1e-141279168Myocyte-specific enhancer factor 2A
3mu6_C1e-141279168Myocyte-specific enhancer factor 2A
3mu6_D1e-141279168Myocyte-specific enhancer factor 2A
Search in ModeBase
Cis-element ? help Back to Top
SourceLink
PlantRegMapMedtr8g086290.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAC1397460.0AC139746.15 Medicago truncatula clone mth2-17b20, complete sequence.
GenBankAC1481770.0AC148177.13 Medicago truncatula clone mth2-4c9, complete sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_003629764.11e-129agamous-like MADS-box protein AGL62
TrEMBLG7LIR51e-128G7LIR5_MEDTR; MADS-box transcription factor family protein
STRINGAET042401e-129(Medicago truncatula)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF12833331
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G60440.15e-31AGAMOUS-like 62
Publications ? help Back to Top
  1. Young ND, et al.
    The Medicago genome provides insight into the evolution of rhizobial symbioses.
    Nature, 2011. 480(7378): p. 520-4
    [PMID:22089132]